Gene detail

Detailed information of ENSAPQP00000022475.1 in Leptogorgia sarmentosa

Genomic Location: :...
NR annotation: XP_028404772.1, eukaryotic translation initiation factor 2D-like [Dendronephthya gigantea]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSAPQT00000025305

AAATTTCACTTCCTGTTTTGAAGTACGTCATGTTAGGAGATATATAGTAGAACGACAaagatataataaaaaaataacaaatatactaATTTTAATAAAGCGTTatgtattgttttattattaaatatttcaatacattTAATATGatgaaaatgtattatttataatgAACTAGACTTTTACTGAGTCATCATATTGTACTTTTTGTCATAACTCCTGCAGttcattgaaaatttcataaaatatgtTTCTGAAGAACTTTCGTGTCAAATCCAACACAGCTATTCGAGGATCTGATAGGCGGAAGTTGAGGAATGATATTTTAAGAGAATTTCCACATATCACGCAAGAGCTTGCCTCTGAAATTATCCCCAACAAAGAAGACATGTCTGTCATGAAAATTATGACACATTCTGGTGCAAATGTCACTGCGTACACTCTAAATGGATCACCAATATTTTTCCAAGTGGAAACAAAATTATATCCTACAGTGTATTCTTTATGGAAGTACCCTGATATATTGCCGGTGTTCACAACATGGCCAAACGTTTTCGAAAAATTGTGTGGAGGTGCAGATTTGATGTTGCCGGGTATAATACAAACAGCAGATCGAAATGTGGATAACGAAAAAGAGTTTCAGAAAGAAGATGTATGTTCAGTTGCCTTGCTTGGAAACAGAGCTCCAGTAGCTGTTGGTTATACAGCGGTATCGTCCACGGAGGCAAAAGAACAAGGTATGCGTGGCAAAGGAGTGATTATTCTTCATTCATATTTGGATCATTTATGGGCGCAAGGTTCCAAGTCTGAAATTCCAGTGATTCCTCCAGTGTCGTGTACAAATACTTCTGAAGATATTTCCACCAGTATTCAAGAAGATGTCGTTGATTCTGATACAAACGAAACCTCGACAAATATCCCCTTAAATACAGATGATGGGACAACAGAAATTACAGCAGGGAGCGAAGCTAGTGACGAGTGTAATGAGACGTTACGTAAAAACATGAACAGAATAGAGCTAACGAAGCAGGTCGCAACCGAATTGTCATCGTCTCTGGACAGCAATGAAACGGCACCGACACCTCAATGTCCAAGTACAGACGACACTGAAGACAACGTGACAGCTGTGACTTTAGAGGAAGATGCCACAGAGCGCTGTCCTACCGATGCCATGGATGAACTGTTGGAAAGAAGTTTTATGCATGCTTTGCTTTGCATTAAGAGTAGTGAATTGCCAGTATTGGCTAgcacattttttaaaaattatttactaCCATGCTGCCCACAAGATCAATTGTTGGACATTAAAAAGTCTAGCTACAAAaagTTGACAAAGTTTCTTCAAGTGATGGAGAAAAGAAAGTTTATTGCAATAAAAGAACAGTCGAAAGGCGTACATTGCATCGACGGTGTTAACTGGGCGCATGAAAAtttaaaaacTTTCAAGAAAGAAAATTCAGATGTTATTTGCGAAAAGCGCCAGAACGATATTGAATCAATACCAAACGATCAATACCAACCACCCGAGATCGAAGATGTCTTCGCAGTATCTGGGTCTACGCGGCCACTTTTTGAAAGTCTTGGTTACAGAAAAGGTGCAGTATTGACAGCAAAAGAAGTTCGACAAGTTGTTACAGATTATATCAAGTCTCAAGAACTTGCTTCTTTAGAAAACAAAAGAATGGTAAAACTTGATCCAGTAATGTTTTCCATCGTTCATAAGAAGGGAGAAGATAATTATGATTCCCTGACATGGGACGAAGTTTTCAAAAGAATTATTGATCGAATGAATCCTTGtcatattgtgatatttaaaGGACAAGCGCCAATAACTAGAAAAGGTAAACTTGAACTGATTGAAATCAAAGTGGAACAGCGTATGGGCAATAAAAAGGTCACTTTGGTTCACAATCTGGAATATTACGGTATTGATCCAGCGGAATTTTCTCACAAACTGCAACTAAAGGCTGCATCAAGTACTTCAGTTTCACAGTTACCGGGAAAATCTAATGCAGGTCATCAGGTTCTAATACAAGGAAatcaaatttcacatgtggCTAGAACGTTGCAAGACGACTATCAGATAGCAGCCAAATATATCAATGGACTAGACAAGCTTAAACAGTCTaagaataaaaagaaataactTCTGGAATTTAAGAATGCAATTCACTTGTAAGTATCATAAAAAGAGAGTATGTTTAATGTTAtgatgttttatatattttattttcatcgaaATGATGGTGAGGCAGCCGAACACATTGATCTACCATAGTTTACTATATCACAACCGTACTGACAGCATTCTGGCTGAAAAGATGGCTAGCATAACGGACGCGTAAAACTCGGTGCACTATGGGGCAGATCACATGAGCTAGGCTGGCCCGGTAATTCTTGGCTGCTATGCAAGTTTGATCTTTCCTTTCATATGAACAAGGTCCCGTCAAGGTGTACCATATAATTTGGGTACATGCTATTACGTTTTCACGATTACACTACAATTACACTACGTTGTCTTCCATACTGCTGAAATGGCAAATATTGTAAAACAGTAGAAATATATTAAGGTCAAGTATGAGTTAAGTGTTGCAGTATATTTAGGATTGCAGCCGTTTGTAACGGCCTGTTCGTATTGCGATTCAAACTTTTCTGGCGTATGTCTTGTATTTAGCTTGTCTGAACACTGACCAGGACAAAACTGCTCACACTCAGGGCAGCGTAATGTTCCAATTATTGACCAGTCTCCCAATGTACTGTTGATTTGTAAAACATTTCCTCTCTTTGtgcatttatatttctttCCTGCGACGCTAATGTGTAATGTCTTGTCAGAACATGAGTATTTATAACAACCACTTCCCCAGTCTAGCATGGTACGAGTTAGAAGTCCTTTCTTTGCAATCCACTGGCTCGCTTGCTCTACACACTTGGATTCAGGCCCGTAACTTTCTAAAGCGTAATTATCGAAATAGTCAGGGCTATTGTCCTGTATATGACACGCTGTTTCTCTGGCTTCATGATTGAATTTTGTTAAACTAAACTTTTGATAGAACGGGCAATAGTCTGCAA

Protein

Uniprot

Uniprot term	Description
Q5PPG7	Eukaryotic translation initiation factor 2D OS=Rattus norvegicus OX=10116 GN=Eif2d PE=1 SV=1
Q61211	Eukaryotic translation initiation factor 2D OS=Mus musculus OX=10090 GN=Eif2d PE=1 SV=3
Q5RA63	Eukaryotic translation initiation factor 2D OS=Pongo abelii OX=9601 GN=EIF2D PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01253	SUI1	Translation initiation factor SUI1	Domain	Interproscan
PF17832	Pre-PUA	Pre-PUA-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003121	Domain	SWIB/MDM2 domain	Interproscan
IPR001950	Domain	SUI1 domain	Interproscan
IPR039759	Domain	Eukaryotic translation initiation factor 2D, SUI1 domain	Interproscan
IPR036885	Homologous_superfamily	SWIB/MDM2 domain superfamily	Interproscan
IPR041366	Domain	Pre-PUA domain	Interproscan
IPR048248	Domain	Eukaryotic translation initiation factor 2D-like, PUA RNA-binding domain	Interproscan
IPR004521	Domain	Uncharacterised domain CHP00451	Interproscan
IPR039757	Family	Eukaryotic translation initiation factor 2D	Interproscan
IPR036877	Homologous_superfamily	SUI1 domain superfamily	Interproscan
IPR015947	Homologous_superfamily	PUA-like superfamily	Interproscan
IPR048247	Domain	Eukaryotic translation initiation factor 2D, N-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12217	EUKARYOTIC TRANSLATION INITIATION FACTOR 2D	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003743	Molecular Function	translation initiation factor activity	Interproscan
GO:0006413	Biological Process	translational initiation	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0001731	Biological Process	formation of translation preinitiation complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15027	EIF2D; translation initiation factor 2D	-	Translation factors	ko03012	deepkoala