Gene detail

Detailed information of ENSAPQP00000022612.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: CAB4000903.1, microphthalmia-associated transcription factor-like isoform X2 [Paramuricea clavata]
Species abbreviation LSARM · all data for this species · gene families

Sequence

CDS

Transcript

ENSAPQT00000025445

TTTCAACCTTTTAAAACCTGCGGTGAAACAGAAACTTCAGTGTTCAATATCTGTGTATGTGACGAAAAAGAATTTTCATCACTGTTTATATAAATTACGTCATTCTTACGAGCTAGCCAATGAGCAACCTGCAACTTTGATTGGTGTGGGCCGTACAATCGGAGCCGTAGATATCAACATGTCGTAGCAGGAAATGGTGTAgagttgtttttcaaatgcaGCTTTATTCGACAGTAGACTGCACAGACTTTCCGCGATCATCTTGAAACGCAGCTCGTAAGTTCTTCTAAAGCACCCTAATGCAAGAATCTGGTGTCGATCTcgaatttgatattttggacgATATCGAAGAATTTCAGCCGAAGGTTGGCTTCTATGAGATTCAGTCTCGCATTTTGGACGATGTCATAAGTCAATCTCCAGCCAAGAATCTTGATTCAGGTGCTGATGCAATATTGAGTGAGTTATTAACaccaaaagaaaacaaaatggcctCCATGAGTCGTACACAACAGAAGCTTGCGCTTCAACGGGAGCACCTGCTCAAACAAGAGCAGAAGAAGAAGGAACAGGAAAGACAACGGCAGCTTGAACAGTCTTCGGAAATTTCTATTCCATTTCCAAGACCTACGGAGACTCTGCCTCCACACATACCGCCAGCTGTGTTAAACTTTAAAACCAAGCTAGAGAACCCCACCAAGTACTATGTGTATAAGACCCAAGAGCGAAAACTGAAGGAGTATATCAATCAACATGGGACTACTCCATCTCAAGGCTTCACACCGCCTACATCTCAAGCCACTTTAAATGCTATCAATAACATGACTCCTTTGTCATATGTTGGTGATAGCCTCGGTATGATGGGAGCAATGAAACCGCCTGATAGCCCAATGTCCGCTGCTAGCTCCACAGAACCATCGGAAGTCGATGAAATACTTGAAGACATTATTAGtCTTGAAGGAGAGAGTACTGCGGTAAATCAAATCGGACTTGATGACAGCTTTTTCAATTTCGCGGTTGCTAATTCCACATTCCCGTTGCCTGCTCCATCAAGTGTTTCTGATGTATATGCCGGACGTAACGTATCTTCGGGGTCCTTGCCAGATGCAATTTCCACGTCTTGCCCCCCAAAGATAAAGCAAGAACCTGGTGAAAGTTGCAGCAACATCCAAAAGTTTGATCATGTGACTTTTATGAAAGACCGTCAAAAGAAAGATAATCACAATATGATTGAACGAAGACGACGGTTTAATATTAATGACCGAATAAAAGAGTTGGGAACTATGATCCCAAAACAAGATTCGGAgatgaaacaaaataaaggCACTATTTTAAAGTGTACTGTGGATTATATTAGACATTTGAAAAAGGAAAACGACCGACATAAATCCAATTTGGAAAGGTTCCGAGAAACTGAAGAACTGAATTCAAAACTTTTACTACGAATACAAGAGTTGGAGATGCATTGTCGCGCACACAACGTTCCAGTAACGCCTTTAACAAACGACACATCAACAGCAACTTTGTCAAGTTTACTCACTGCCAAGAGAACTGCTCAGCCTCATTTAACTCTAGAACCTGAAAAGTACTACAGTAATGATAGCGGTTCGTGCATGAATATGGATTCTTTTGATACCAGCAATCGTTTCGACAATGAGGACAACGGTATGGAAACATGAAGCAATGTAATTTTATTCTCGGCGAGGTATGGCGAAATTTCTTTTGATAACCACCCTGAACTGGATGGAAATCTGAATAATGGTGTCACAGAGTAACCTGCAACAAATCGTTTCGGATTTGATAGGCTGGCGGGACTCTCGTTCTACGGAGGCatttttatttccttttcaTGTCAGTATCATCCGAGACAACTAGGAGTAGGTTCATAATGAACGTGAAGTGACAAAATTCACAGTAGATTCCAGCAAATTAGTTTGGCATTCTACTTGGCACTGAAATGATTCGTCTTTTATTGGTTTTTTAATTGGTCAAACTGGTAAAGATATCTCACAAAACGTACAACGTGGGTAGTACTACTGACCACCTCTGCATCATTTCTGGGAGCTGAAATTCTGGAGTGAAGTGTTGTTTCATGCAAACCTTGGACTAATCTAGACGTGCAATAATTGATGTCCAACAATAATCCTAATTGTACTGTAATGATAATAAACATCGTACCTGATGTTTTTGATTAACAACAAACGAACAACGAAGTCTGGGATATTTTTAAATGACCTAATGACAGTTACAccacaaaattattttaaagtttaaacctCGTTCAAACTTGGAAAGTCTGATTTAACGTGCGATCTCGACAATTTTTTATGTGTACAAAACAATATTGTATATGCCTATAGCGAACTTTGTTGGTGCTTCTCCTGCGAATCATTTGCTTATGGCGTACTACCTGCTTAGCCGCTGTCTCAGATTAGTGGCGCTGCATACTTACGAGGGCAGACTTCGCAATTCTCCCCCAGTCTTACGCATACTGCATGTACTTGGCTAGCGCGGTCCTGCCATGTATTGCAAATTAGCTTCGTCCAATTAGATTCTTCGTTCTGTGCTTTTAAAGTGCGATGATAACCCACATGGCTAATGGCGTCAGCACGTCATGCCGCGAGAATGACGTTGTATAAGCAAGTCAAATAGTCACTTGTAGTCAAATCGAAAGCTCT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q08874	Microphthalmia-associated transcription factor OS=Mus musculus OX=10090 GN=Mitf PE=1 SV=4
O88368	Microphthalmia-associated transcription factor OS=Rattus norvegicus OX=10116 GN=Mitf PE=2 SV=2
O75030	Microphthalmia-associated transcription factor OS=Homo sapiens OX=9606 GN=MITF PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005210 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15951 all species →	MITF_TFEB_C_3_N	MITF/TFEB/TFEC/TFE3 N-terminus	Family	Interproscan
PF00010 all species →	HLH	Helix-loop-helix DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR031867 all species →	Domain	MiT/TFE transcription factors, N-terminal	Interproscan
IPR011598 all species →	Domain	Myc-type, basic helix-loop-helix (bHLH) domain	Interproscan
IPR036638 all species →	Homologous_superfamily	Helix-loop-helix DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45776 all species →	MIP04163P	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSAPQP00000022612.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.