Gene detail

Detailed information of ENSAPQP00000023134.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: XP_028405281.1, hydroxymethylglutaryl-CoA synthase 1-like [Dendronephthya gigantea]
Species abbreviation LSARM · all data for this species · gene families

Sequence

CDS

Transcript

ENSAPQT00000025967

GACCATTCGAATGTTCGACTTCGCCCTTTCCTTCCTCCCTTTGTATTACATCATTTCATTCACGAGGGGTAGAATCgtaaagttttgaaaacaatatttcgatatttgtgtatatttattgtttttaccGTCACGTATATATAATGTCTTATAGCCAGCGTTCAACTTGGCCGGACAATGTTGGTATTTTAGCGATAGAAGTGTATTTCCCCTCGACGTACGTGGACCAAAGTAAACTTGAAGAATATGATGGTGTCAGCAAAGGCAAATACACCATGGGTCTTGGACAGACTGGGATGGGGTTTTGTGGAGATCGCGAAGACACGAATTCTCTCAGTTTAACCGTCGTACAAAACTTACTGGAGAAGAACTCCATTGATCCAAATCAGATTGGAAGACTAGAAGTGGGCACTGAATCTATATTAGATAAATCAAAGTCAGTGAAGACTGTACTGATGCAGTTGTTTGAACAAAGTGGAAATTCTAATATCGAAGGAGTGGATACTATCAATGCATGTTATGGGGGAACGCAGGCATTGTTTAATTCTGTGGCCTGGATTGAAAGCAGTGCCTGGGATGGTCGTCTTGCAATTGTTGTCTGTGCTGATATTGCAGTATATGCTGCAGGAAATGCTCGACCATCAGGTGGTGCAGGAGCAGTAGCAATGCTGGTTGGACCAAATGCACCTTTAGTAATGGAAAGAGGTATGCGTTCTGTTCATTGTGCTCATGCGTACGACTTTTACAAACCAGATCTAAATTCAGAATATCCAGTTGTGGATGGTAAACTGTCAATCAACTGTTATCTTAGTGCGTTGGATAAATGTTATCAGGGTTATAAAGCAAAAGTGGATCAAAAGGAAAAGATGACTTCTAACGCAAATAACTCTGAAGGAGTATGTTTGGAACATTTTGATTACATGGTATTTCACGTGCCTTTTTCAAGATTATGTCAGAAATCTTTGGCAAGGCTGGTGCtaaatgattttcttcaaGAAACTAATACAGAAATACAAAGTGAGAAATACAAAGTTCTTAGTGATTTCAGAGACATTAATCTACAGCAGCTTGCGAATGATCCAGTATTAGCAAAAGATGTGGAGAAAGCGTCTTTGAAATGTAGCCAGACTgcatttgaaatgaaaacggAGCCATCATTGCTTGTTTCACGTAACGTTGGTAACATGTATACGCCATCGCTGTATTCTGCATTGGCCTCTGTTCTAGTCAGTAAATCATTGTCGGAGCTACGTGGTTGTCGGATTGGGATGTTCTCATACGGTTCCGGTCTCGCCTCTGCAATGTTTTCTTTGATAGTCACTGATGCTGAAACCTCAACAGCTCAAAAACTCTTCAATAACCTGGCTGACATTCCggaaagattgaaaacaaggACAGAAGTACCGCCTGATGAGTTTGttaaaattcttgaaattcGAGAGAAGACTCATCATTTGAATAACTACACGCCCTGGCAACGGGCCTCGGACATTGCAAATGGAGCTTACTGTTTACTTCATGTAGACGAGAAATATCGTAGATCGTACGCTCGTAGGACGTCGGACGGCTTTGTTGATTTCGACGGAAATTGTGTTATTGTGGAAAAACCGCTGGTCGAAACGGCTGTGCCAGCATGCCAGTTATATTGAATGTGTTGGACTGTTTTCCTGGAGACgaatgagcatgtgctcattaTGCAAACTGATACAGCAAACTGActaaattatttttagatttaatattaataaccGAAATTTATCATCCAGTATTACGAATGGGACGGTTACACATAGTGATTTGTCGGGCCCCATTTCGCTCGCTGCATGTAATTAATCTGTCGTGAGTACTTGCGTCAGAGGAAAATCGATAGAAAACCAATCGCACGATTCAAACGGTTATTTCTCTTCTGTTGTAATATTGTTAAAAACTTCTACTGCGCACAAAAACCTGTGACATGAACAGACGAGAGAGCGGGCGGCTTCAATTCTTCACGTCGAAGAAGAGGCACTAATTATTTGCCAAAAACGACTCAACAAATCGCTGTGTGGAAAGAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P23228	Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS=Gallus gallus OX=9031 GN=HMGCS1 PE=1 SV=1
Q01581	Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS=Homo sapiens OX=9606 GN=HMGCS1 PE=1 SV=2
Q5R7Z9	Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS=Pongo abelii OX=9601 GN=HMGCS1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005551 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01154 all species →	HMG_CoA_synt_N	Hydroxymethylglutaryl-coenzyme A synthase N terminal	Domain	Interproscan
PF08540 all species →	HMG_CoA_synt_C	Hydroxymethylglutaryl-coenzyme A synthase C terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016039 all species →	Homologous_superfamily	Thiolase-like	Interproscan
IPR013528 all species →	Domain	Hydroxymethylglutaryl-coenzyme A synthase, N-terminal	Interproscan
IPR000590 all species →	Active_site	Hydroxymethylglutaryl-coenzyme A synthase, active site	Interproscan
IPR010122 all species →	Family	Hydroxymethylglutaryl-CoA synthase, eukaryotic	Interproscan
IPR013746 all species →	Domain	Hydroxymethylglutaryl-coenzyme A synthase, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43323 all species →	3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016746 all species →	Molecular Function	acyltransferase activity	Interproscan
GO:0004421 all species →	Molecular Function	hydroxymethylglutaryl-CoA synthase activity	Interproscan
GO:0006084 all species →	Biological Process	acetyl-CoA metabolic process	Interproscan
GO:0010142 all species →	Biological Process	farnesyl diphosphate biosynthetic process, mevalonate pathway	Interproscan
GO:0008299 all species →	Biological Process	isoprenoid biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSAPQP00000023134.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.