Gene detail

Detailed information of ENSAPQP00000023535.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: XP_028403796.1, TATA-binding protein-associated factor 2N-like isoform X1 [Dendronephthya gigantea]
Species abbreviation LSARM · all data for this species · gene families

Sequence

CDS

Transcript

ENSAPQT00000026368

GCGGTGATAACTAGGTGATATTAAATAAGAATCCTTCATAATCTGGTCTAAGATTCATACATCGTGACCAAATGGATAGTGAGTACAGTGTAATGGTGAGCAATAAATTTGCTGGTCTTCTAGTGGACGAAGAAGACCCTACAGAAATTATAAATGGTCCGAAAGAGAAGTCGAAAGACGAAGATATCAATCGCAAAGACAGTAAGAAGAAACAGATTTTTGACAAGAAAGCTCCCAAACCTAACACCAAGGATGCATTTGCGAAGAAAGAGAACGTAAATGATGAAAACAAGAAAGACAACCGCAAAGAGAAGCAAGATGAAAGGCGTGGACCTAGACGAGATGACACAAGGCGTGAAAACGAGAAAAATACGCGGATGTCCAATGGCCCTGCTAGCCCCAATGAAAGAAAGAACTTTGATAAACCTCGTGGAGGGGGCTTTGGCAGGAGACGAGATAACCAATCACATGATGGAGACAACAACAATCGTGAGGAACAGAAGTTAGATTCTGGTGAAAGATCTGGTGGCTTTGGTAACCGAGAGAACAGAGGTGAGAGAGGAGGGGGTTTTGGTAATCGGGAGGACAGGGGTGAAAGAGGAGGTGGTTTTGGTGGACCCAgagatgaagaacgcagcggTGGTAGAGGTCGTGGTGGCAGAGGACGCGGAGGAAGAGGTTTTGGTCGTGGAAGAGGAAGAAGGGAATATGACAGACACAGTGGAAGTGACAGAACAAGTATCAAGCCAGAGGAAAAGCGAGATGGTGGTGGACAGTATAACTGGGGAAAGGCCACAGATATGAATGAATCTGACAATGTTTCTGGTGAAGAGGTGAATGACTGGGGTGCTGAACCTGCAACAACTGAACCAACTGAGGAACCCAAAGACAACAAAGAAGCTGAGGAGGAAAGAACATCTGAAGGAGATGAAGCGAAGGAGGAAGAAGTGCAGGAGATGTCTTATCAAGAATGGAAAGAACAACAGGAAATGGGCAAAgaacaaatgaaatataaattgGAACATAGTGAGAGGAAGGCTGGTGAAGGAGAGAACAAGTCACAATGGAAGAATACGAAAGTGTTCAAACGAAAAGAAGATGTTGATCCACTGTATACTGAACGACGGGAATACGAAGAGAAAATCAAGACGTCTGGACGAGTGAAACAAACACTGGAAATTGATATCAAGTTTGCACCCGGTGACAAATTCCAAGATTCAAGAGGAGGTCGTCGTGGTCGTGGTGGACCTAGAGGTGGTCGAGGTGGCAGCGGTGGTGAACGCCGTGGTGGTGGCTTTGGTGATCGTGGAGACCGTGGGGATCGTAGTGGAGGCTTTGGGGACCGTGGGGATCGTAGTGGAGGCTTTGGTGATCGTGGTGACCGTGGGGAACGTAGTGGAGGCTTTGGGGATCGTGGGGAACGTAGTGGTGGCTTTGGTGATCGTGGGGACCGTGGGGAACGTAGTGGTGGCTTTGGTGATCGTGGTGATCGACGAGGTGGAGGCAGAGGTGGAGGTGGTTTTGGTAGGCCAGGGGGAAGAGGTGGAGGGTTTGGTGAAAGGCGTGGTGGTGGACGTGGAGGATTTGGTGATAATGTTGTTGATGAAAATGAGCTGAAATTTGATAACGATGAAGAGTTCCCAACTTTGGGATGAACACTTAGTTTCAATCCTGTCATAAATCCTGAGCAATGGATCCCGTTATATTATTAGATGATTTACATATACATAAGTGCTTGTTGCGAAACATATGAACTCTGATTTATTTCCAAGTGCTTGTTGCGAAGACTTTATTATGCGAGTGCTGGTCATGAAGATATAAGTTTTGACTATTTACTAGTGTTCTTTGCAAGACTTGAGTATCGATATTCTATAGTgacttgaagaaaaaaaaatcgtGATGTGTTTCATTGCTAACGAAACATGgcgtattttttaaaaatttagcaCAAGTTCTAGTTGGCAAGATTGTCTTGTGCTGTGCTGTGTTGGTAATATATTGTTTAGCACATGTGAATTGAAATTGTGGATGGTGCAACAATATCGTCCTAGACTGCGAGGTACAACTTCGTGATGGGACATTGAGGTAGTAGTAATGTGTATTGTGCAGAGTGACATTAAGAGCGTGGTAATAGTCCATTTGTGTAAAATATTGATTAGTAACTGGATAAAACAGGATTATAAAAACTACGTCtttatattttgatttaaTAGTTAATGCATGGACTGATATGTATGTTAATTGTATCGACCCTGATCTTGTTAATCCCCGGAGTGAAAAGTGGTTGTGATTGAACCTGTCTCGTAAACCACACCCGCAAATCAGATCTTCAATTACTTTCGTGTATCATGCAGGGCTGTGCAAACTACATACAGTATACGAGAAGGGGGGGAGGGAgcgcaccccccccccccccttccgcCAAAGCTAC

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004881 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04774 all species →	HABP4_PAI-RBP1	Hyaluronan / mRNA binding family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039764 all species →	Family	RNA binding protein HABP4/SERBP1-like	Interproscan
IPR006861 all species →	Domain	Hyaluronan/mRNA-binding protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12299 all species →	HYALURONIC ACID-BINDING PROTEIN 4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13199	SERBP1; plasminogen activator inhibitor 1 RNA-binding protein	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.