Genomic Location: chr3:16718689...16721460
NR annotation: CAB4031989.1, CCA tRNA nucleotidyltransferase 1, mitochondrial [Paramuricea clavata]
Species Leptogorgia sarmentosa · all data for this species · gene families
| CDS |
| ENSAPQT00000026578 |
| Transcript |
| ENSAPQT00000026578 |
| Protein |
| ENSAPQP00000023745.1 |
| UniProt accession | Description |
|---|---|
| Q96Q11 | CCA tRNA nucleotidyltransferase 1, mitochondrial OS=Homo sapiens OX=9606 GN=TRNT1 PE=1 SV=2 |
| Q8K1J6 | CCA tRNA nucleotidyltransferase 1, mitochondrial OS=Mus musculus OX=10090 GN=Trnt1 PE=1 SV=1 |
| F6NXI9 | CCA tRNA nucleotidyltransferase 1, mitochondrial OS=Danio rerio OX=7955 GN=trnt1 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0007822 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01743 all species → | PolyA_pol | Poly A polymerase head domain | Domain | Interproscan |
| PF12627 all species → | PolyA_pol_RNAbd | Probable RNA and SrmB- binding site of polymerase A | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR002646 all species → | Domain | Poly A polymerase, head domain | Interproscan |
| IPR043519 all species → | Homologous_superfamily | Nucleotidyltransferase superfamily | Interproscan |
| IPR050264 all species → | Family | Bacterial CCA-adding enzyme type 3 subfamily | Interproscan |
| IPR032828 all species → | Domain | tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR46173 all species → | CCA TRNA NUCLEOTIDYLTRANSFERASE 1, MITOCHONDRIAL | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003723 all species → | Molecular Function | RNA binding | Interproscan |
| GO:0006396 all species → | Biological Process | RNA processing | Interproscan |
| GO:0016779 all species → | Molecular Function | nucleotidyltransferase activity | Interproscan |
| GO:0000049 all species → | Molecular Function | tRNA binding | Interproscan |
| GO:0001680 all species → | Biological Process | tRNA 3'-terminal CCA addition | Interproscan |
| GO:0005739 all species → | Cellular Component | mitochondrion | Interproscan |
| GO:0008033 all species → | Biological Process | tRNA processing | Interproscan |
| GO:1990180 all species → | Biological Process | mitochondrial tRNA 3'-end processing | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K00974 | cca; tRNA nucleotidyltransferase (CCA-adding enzyme) | EC:2.7.7.72 EC:3.1.3.- EC:3.1.4.- | Transfer RNA biogenesis | ko03016 | deepkoala |
Genes whose expression across the transcriptome samples of Leptogorgia sarmentosa tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Leptogorgia sarmentosa, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
