Gene detail

Detailed information of ENSAPQP00000024595.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: CAB4016231.1, ubiquitin-like modifier-activating enzyme 1 [Paramuricea clavata]
Species Leptogorgia sarmentosa · all data for this species · gene families

Sequence

CDS

Transcript

ENSAPQT00000027427

TATGTCCGCAGGTCTGCTTCTAGTCCTCTTATGTTTTTATCTCGTGCTACCAAGCTACTGAGATTTTTGGCTACTGAGATTTTTGCCATCCTACTTTTATTAGGCTTTGTCCCTCCAACAGTCGATTATTTATATATGCAAATCTTTTCTTCCAGTCCATCTCGTTTTCAGTTCTTCACGCTAAATAATGAAATGTAGTGTCATGTTTCTTAACTGTTCATAAAAGTGTATGATGACGATTTCTTTGAGAACCTAGATGGGGTTGCCAATGCTTTGGATAATATTGATGCAAGAATGTACATGGATAGGAGATGTGTTTATTATAGAAAACCTTTATTAGAATCTGGAACATTGGGTACTAAAGGCAACGTACAGGTTGTTTATCCATTCTTGACTGAATCCTACAGCTCGAGTCAGGATCCACCAGAGAAATCTATACCAATCTGTACATTAAAGAATTTCCCAAATGCCATAGAACATACTTTACAGTGGGccagagattcctttgaaggtTTATTCACGCAAGTAGCAGATAATGCCATACAGTACTTAACTGATCCTAAGTTCATGGAACGTTTGGGCAAACAACCTGGTGTTCAACAGGTGGAAACATTAGAAAATATTCGCAAAAGTCTCGTGGAAGATCTACCAAAGGATTTTGCTGATTGCGTAAAGTGGGCGCGACTTCTATTCCaagaaaattatcataatcaaATTGCACAACTTCTTCATAACTTCCCTCCTAATCAGACAACCACCTCTGGCCAGCCATTTTGGTCAGGTCCAAAACGTTGTCCGCATCCTCTGGTGTTTGATCCGTGTAATGAAACCCACATGAATTTCGTTACATCTGCTGCCAATCTCCGGGCTTTCGTCTACAATCTTAAAGGCTCAGTGGACAAAAAGTTTATCCTGGACATCTTGGAACAAATGAACGTCCCAGCATTTAAACCCAGATCAGGTGTGAAAATCCACGTGAGTGATCAAGAAGCTGAAGCTGCAAGCCAAGCCTCCGTAGAACAAAATGAAGTGGACAAAATTATTTCCAGTCTGCCATCGCCTGAAGTATTGAGTGGAATAAAAGTTTCTGGTGTAGAATTTGAAAAGGATGATGACACCAACTTCCACATGGATTTCATTGTAGCGTGTTCTAACCTTCGTGCTGAAAATTATGATATTGCCCCTGCTGATCGACACAAGAGCAAATTAATTGCGGGTAAAATCATTCCTGCCATAGCCACAACTACTGCTGTTGTATCAGGTTTGGTCTGCTTGGAGCTTTATAAGATTATTCAAGGCAGCAAGAAATTAGAGACGTTCAAAAATGGATTTATCAACTTGGCTTTGCCTTTCTTCGCATTTTCTGAACCAATCTCCGCACCTAAAAACAAATATTACGAGACGGAATTCAGTCTATGGGATAGGTTTGAATTGACTCTAAATGAAAAAGGTGAAGAACTTACCCTTCAGGAATTCATGGACTACTTTCAGAATGAACATAAACTGGAAGTGTCCATGTTATCACAAGGAGTGTGTATGCTCTACTCGTTCTTCATGCCGCAGTCCAAACTCAAGGAACGTCTGCCATTAAAGATGACTGAACTAGTTGCtaaagtttcaaaaaagaagATCAAGCCCCATGTTAAAGCCTTAGTCTTTGAATTATGTTGCAATGATGCTGACGGTGAAGATGTTGAAGTTCCGTATGTTAGATATAAGTTCCGCTGAATGTCCAATCTATATATAGACACTTGACTGGTTTTACAACATCGTCAAGAAGGCTCAAAGCTGGTTGTAATGTGTAATTCTTTActcaatattaattttgtcttttttcaagttttagtTTAGCtaataatatttcattttctttcaaacattattGCTTGATTGTATATACGTATGTGACTTCGACTGTACCAGGCTAAATCTTTCTTCCCAAAACTAAAATACTGCTCTCCAACATTGAAGACATTCTGCTGTACATGGATGGTACGAGACTGGGTGTATATATACTCAGTGTCCTGCTTAGACCCCTCTATTTTCACCTGGACGCGTGAGAGAGATGGAGGAATGGGAAAGAAGGCCTGTCAAATCCCTTTCTGGTCTTTTATTGTGATTGGTTTACCAGACAGGTGTTTTTGGTGGTGGGGTTATCGCTTTTCGAACACTAAATCCTGTTACCTAGTGGGCGTATTTCGTCGCAGAATAGTCCAGTAAATATGGTTGCTGTAGTAATAGCAACAATAAGGCtggttttctttcttttcccacagttttctttatttttgttGCTAAGATGCACTATTGACAAGGACACTACACGTTTAATTTGCCGTAAACAGACGAGTTTTAAAACATCAAGTACAACAATACTTTGATAAGGTGTGTTGGGTTGTATTTTAACAcccaattcaaatttcaaagtttATAGTAAATCCAATCTTACAACAACTTCTTATCtacatttatttaatataCAGATATCCTTTAATTTCCATCTTTTTATCAActaaaagaaaatgtttccatCTTTTACTGCcagaattgaaaatgaaaacgtGAAGTGGAATGTAATTGTAACCATTACAGCCTCACACAAAAAGTAGCCTTCATTCTTGATTTGGTCAATGTTTAGCCTGTTCCATTCAATGAATTTAACACTCTTCTTTCAAACTTCACACAGGATGATGGGCAGATCTGGGTGAATCTTTGGAACCTGCAAAC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A3KMV5	Ubiquitin-like modifier-activating enzyme 1 OS=Bos taurus OX=9913 GN=UBA1 PE=2 SV=1
Q29504	Ubiquitin-like modifier-activating enzyme 1 OS=Oryctolagus cuniculus OX=9986 GN=UBA1 PE=1 SV=1
P22314	Ubiquitin-like modifier-activating enzyme 1 OS=Homo sapiens OX=9606 GN=UBA1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001434 (this species only)
Ubiquitin family	E1\|ThiF\|ThiF · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09358 all species →	E1_UFD	Ubiquitin fold domain	Domain	Interproscan
PF10585 all species →	UBA_E1_SCCH	Ubiquitin-activating enzyme, SCCH domain	Domain	Interproscan
PF00899 all species →	ThiF	ThiF family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038252 all species →	Homologous_superfamily	Ubiquitin-activating enzyme E1, C-terminal domain superfamily	Interproscan
IPR042063 all species →	Homologous_superfamily	Ubiquitin-activating enzyme E1, SCCH domain	Interproscan
IPR045886 all species →	Family	ThiF/MoeB/HesA family	Interproscan
IPR018965 all species →	Domain	Ubiquitin-activating enzyme E1, C-terminal	Interproscan
IPR033127 all species →	Active_site	Ubiquitin-activating enzyme E1, Cys active site	Interproscan
IPR019572 all species →	Domain	Ubiquitin-activating enzyme, SCCH domain	Interproscan
IPR000594 all species →	Domain	THIF-type NAD/FAD binding fold	Interproscan
IPR035985 all species →	Homologous_superfamily	Ubiquitin-activating enzyme	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10953 all species →	UBIQUITIN-ACTIVATING ENZYME E1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004839 all species →	Molecular Function	ubiquitin activating enzyme activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0006974 all species →	Biological Process	DNA damage response	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0032446 all species →	Biological Process	protein modification by small protein conjugation	Interproscan
GO:0008641 all species →	Molecular Function	ubiquitin-like modifier activating enzyme activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSAPQP00000024595.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.