Gene detail

Detailed information of ENSAPQP00000024928.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: CAB3984114.1, protection of telomeres 1 [Paramuricea clavata]
Species Leptogorgia sarmentosa · all data for this species · gene families

Sequence

CDS

ENSAPQT00000027763

ATGGCCAATTGGCTGCAAAGCTCTTTTGACGCTTGTACCAATTCGCAGAACAACGCAAAAGTGGGAAGGTCAGCTCCAAGCAACACGCATCAATTACAACGACCTGCTGTTAGTGCTGTATCGACTAATAATGATTACACAAATGTGAAAGAGCGTTATCCTAATGGAGAGACAGTCAGCATGCCTGCACAAAATAAACCCCAACATTGCCAGTATCAATCTAACGCGGAAATAAACAGAATAAAATCAGGAATATTCAGCAAAACCCTTTTCCAAACACCCGAGAATTGGGAAAAGGAACAAACTTGTAATTTGGGTAGTCTCAAGGGCGGAAAAGATTTTGTCAGTGCATTTGCTGTTGTCAAAGATTTTGTTCCGCCGAAGATGTCAAGTGGCACCGATATGTTCAGCAAATTTGGACTTGTTGACCCGACGTTGTACAAAAACAATCGCTGCCTCAGATGCATATGTTTCCAACAGTTTGAGGCGGACATGCCATTGATTACGAATATTGGTGACATTATCAAATTTCCGTTAAGAATAGCGTCACATAAGGGCGGTCTTCAAGGACGCACTTTTGATGATCGTTTTCCTTGGATGACATTTGACGGGCAACCAGGCGAACCCATCGTTCCGCGATATTCGCGTTCTTCCCCACCTGTGTTCACTGACGCCGACAAGAAAAAGGTCGAGGAGCTGAGATCCTGGGCTGAATCCATACAACTCGTTGTAAAAAAAGCTAAAGCTATCACTCTCGCCGATCTGACTGCTGACTTGTACTTTGATTTTTCCTGCCAAGTTGTTCATGTTGATTATGAAAAGAACGAGTTGTACGTTTGGGATGGAACTGCACCTTCTTTTGAAAGTTCGTCGTTTTCGGGAGGATTGTCATTGGAAATGTTCGAAAGTGCGACGGAAGAATGGGGGGAAAGAGTTGTGGGAAAATGTGTAAAGGTCGCCGTGTTTGGCTGTAATCTGAGATTTACCTGTAAGGTTGGACAGTACATATTGATTCCAAGTTTACATTTCATTCTAAAAGATGGAGGTGGCGCTACTCGGaCCCCCGTTTATACGCTTCACTCAAGAATTAAACGTAAAATCAAAGTACTGAACGAAAGTGACAGAGCCGTTATGGTTCTCAAAGAACGAATGGAGATGTTGCCCACACCTGAACCTAGTATTTCTGATTTGGTCTTATTTAAGGTAACACAGGAACTTAAACGAAAGAGAATTGAAAATCTAGCCACGACAgcaagtaaaactacaatgtCACCTGCAAATGTTTCGAGTTGTGGTAACACAAATGAAAAGGCCTCAACACGCCCTGATGGTGTCTCGCAAAAGACACACACCAAACAGGTGACCACACACACCGAGTCCTGCAGTACAACTTCAAAACAGGCCTTTCTGGAGGTAACACAGGCTCTTAAACGGAAAAGAATTAGTGAAAATCTAGCCACGACAGCAAGTAAAACTAGAATGTCAACTGCAAATGTTTCGAGTTCTGGTAACACAAATGAAAAGGCCACAACACGCCCTGATGGTGTCTCCAAACAGATGATCACACACACTGAGTCTTGTAGTACAGCTTCAAGACAGGCCATTGTAAACCCGAGCACCAATTCCTCGATTCCTAAAACGAATTATACGATTCGAGAAATAAAGAATGAAAGATTTGCAACAAGATTTCGTTGCCAGGCGCGTATAAGATACGTTTTACCGAATGAACCTGTACAATTCGTAAAATACGTCTGCAAGTCATGCCGACAACGATACGTACTGGACGATTACAATTACAAAGGTGCTGATACGCTCGATTTTAGTGCTATAGTGAATTGTCTTAACCTGAAATGTAATGCTTCAGTATCCCCTACGGTGCAATTTTCACTCATCTTAAAAGATGACACGGGCTTACTGGATTTATCAGTCACGGGCAAGGTTGCCGAGAAATTTCTTCCTCGTGCAGAGCCGCTGATGTTACTGACAGATATAGAAGCTCAAAAGGATGTGAAACACTTGTTTGAAACTTTACTATCGAAAACAGAATGTATGGAATTTGACATAGAGCGTTTCAACCTCCCCAATGGTAGAACTATCCATTCTCTGGCGGACTGGGAATGTACGTCTGGTAAGAAAGACTAA

Transcript

ENSAPQT00000027763

GCAAAACATTGCTCATTAATACTACTGCAGGCTCATGCATCATTGTTGTGCTTGGGCTTGTGCTTGTGCACGTGGTCACGGAGTGGTGCAAAAATGGGTGACAGATAAGTGAACTGGCCCTTGCATACCGTAAAATAAGTAAAGAACAAGATTACATCTTTGTCATGCGATGGCCAATTGGCTGCAAAGCTCTTTTGACGCTTGTACCAATTCGCAGAACAACGCAAAAGTGGGAAGGTCAGCTCCAAGCAACACGCATCAATTACAACGACCTGCTGTTAGTGCTGTATCGACTAATAATGATTACACAAATGTGAAAGAGCGTTATCCTAATGGAGAGACAGTCAGCATGCCTGCACAAAATAAACCCCAACATTGCCAGTATCAATCTAACGCGGAAATAAACAGAATAAAATCAGGAATATTCAGCAAAACCCTTTTCCAAACACCCGAGAATTGGGAAAAGGAACAAACTTGTAATTTGGGTAGTCTCAAGGGCGGAAAAGATTTTGTCAGTGCATTTGCTGTTGTCAAAGATTTTGTTCCGCCGAAGATGTCAAGTGGCACCGATATGTTCAGCAAATTTGGACTTGTTGACCCGACGTTGTACAAAAACAATCGCTGCCTCAGATGCATATGTTTCCAACAGTTTGAGGCGGACATGCCATTGATTACGAATATTGGTGACATTATCAAATTTCCGTTAAGAATAGCGTCACATAAGGGCGGTCTTCAAGGACGCACTTTTGATGATCGTTTTCCTTGGATGACATTTGACGGGCAACCAGGCGAACCCATCGTTCCGCGATATTCGCGTTCTTCCCCACCTGTGTTCACTGACGCCGACAAGAAAAAGGTCGAGGAGCTGAGATCCTGGGCTGAATCCATACAACTCGTTGTAAAAAAAGCTAAAGCTATCACTCTCGCCGATCTGACTGCTGACTTGTACTTTGATTTTTCCTGCCAAGTTGTTCATGTTGATTATGAAAAGAACGAGTTGTACGTTTGGGATGGAACTGCACCTTCTTTTGAAAGTTCGTCGTTTTCGGGAGGATTGTCATTGGAAATGTTCGAAAGTGCGACGGAAGAATGGGGGGAAAGAGTTGTGGGAAAATGTGTAAAGGTCGCCGTGTTTGGCTGTAATCTGAGATTTACCTGTAAGGTTGGACAGTACATATTGATTCCAAGTTTACATTTCATTCTAAAAGATGGAGGTGGCGCTACTCGGaCCCCCGTTTATACGCTTCACTCAAGAATTAAACGTAAAATCAAAGTACTGAACGAAAGTGACAGAGCCGTTATGGTTCTCAAAGAACGAATGGAGATGTTGCCCACACCTGAACCTAGTATTTCTGATTTGGTCTTATTTAAGGTAACACAGGAACTTAAACGAAAGAGAATTGAAAATCTAGCCACGACAgcaagtaaaactacaatgtCACCTGCAAATGTTTCGAGTTGTGGTAACACAAATGAAAAGGCCTCAACACGCCCTGATGGTGTCTCGCAAAAGACACACACCAAACAGGTGACCACACACACCGAGTCCTGCAGTACAACTTCAAAACAGGCCTTTCTGGAGGTAACACAGGCTCTTAAACGGAAAAGAATTAGTGAAAATCTAGCCACGACAGCAAGTAAAACTAGAATGTCAACTGCAAATGTTTCGAGTTCTGGTAACACAAATGAAAAGGCCACAACACGCCCTGATGGTGTCTCCAAACAGATGATCACACACACTGAGTCTTGTAGTACAGCTTCAAGACAGGCCATTGTAAACCCGAGCACCAATTCCTCGATTCCTAAAACGAATTATACGATTCGAGAAATAAAGAATGAAAGATTTGCAACAAGATTTCGTTGCCAGGCGCGTATAAGATACGTTTTACCGAATGAACCTGTACAATTCGTAAAATACGTCTGCAAGTCATGCCGACAACGATACGTACTGGACGATTACAATTACAAAGGTGCTGATACGCTCGATTTTAGTGCTATAGTGAATTGTCTTAACCTGAAATGTAATGCTTCAGTATCCCCTACGGTGCAATTTTCACTCATCTTAAAAGATGACACGGGCTTACTGGATTTATCAGTCACGGGCAAGGTTGCCGAGAAATTTCTTCCTCGTGCAGAGCCGCTGATGTTACTGACAGATATAGAAGCTCAAAAGGATGTGAAACACTTGTTTGAAACTTTACTATCGAAAACAGAATGTATGGAATTTGACATAGAGCGTTTCAACCTCCCCAATGGTAGAACTATCCATTCTCTGGCGGACTGGGAATGTACGTCTGGTAAGAAAGACTAACAAGCTCAAGTCAAAGGGACATGGACGAAAACTTTGCAAACATTGCACGAAGTCGGCGCATTTGTGTGTTGATTGAGTGAAAGCTCATCTGATTTGACAGtagttgttgttttgttgttgttttgttattgtttctAGTGTTACTTTGGTACGACAATGTGGTAGTAACACCAACAATATAGACGCAGAACAATTCGTACTTGATTTCGTGTGACTTTTATTTCGTGATTTTCGCCTTTGGAAAAAAGTTAAATTCACACGAATATAATTAATTCCTCGTGAAATGAATGAATATGATTCTTAATAAATATGATTGTGGATTTTTCTCGTAATCCCTACTTGCTCAAAAGTTGgagtttaaattaaattaaactaaTTAAACTCAATAAATTATGTTCAGAAATACTGTATTTCGCGAAATTCAATGCTCTTTTACTATTTTCGGCCataaaaatcgcgaaattccGTACTCGCGAAATCAAGTACGAATAAGATATCATGTATAGTAATATCGGTAAATACACTTCATTATACTCCATAGTATGCATATGACTGAATCTACATATCTAATGTGACTAATATTGTTGACTACATGTTGTTGAATAT

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002243 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16686 all species →	POT1PC	ssDNA-binding domain of telomere protection protein	Domain	Interproscan
PF02765 all species →	POT1	Telomeric single stranded DNA binding POT1/CDC13	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032042 all species →	Domain	Protection of telomeres protein 1, ssDNA-binding domain	Interproscan
IPR011564 all species →	Domain	Telomeric single stranded DNA binding POT1/Cdc13	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR028389 all species →	Family	Protection of telomeres protein 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14513 all species →	PROTECTION OF TELOMERES 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0043047 all species →	Molecular Function	single-stranded telomeric DNA binding	Interproscan
GO:0000723 all species →	Biological Process	telomere maintenance	Interproscan
GO:0000781 all species →	Cellular Component	chromosome, telomeric region	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0000783 all species →	Cellular Component	nuclear telomere cap complex	Interproscan
GO:0010521 all species →	Molecular Function	telomerase inhibitor activity	Interproscan
GO:0016233 all species →	Biological Process	telomere capping	Interproscan
GO:0032210 all species →	Biological Process	regulation of telomere maintenance via telomerase	Interproscan
GO:0051974 all species →	Biological Process	obsolete negative regulation of telomerase activity	Interproscan
GO:0098505 all species →	Molecular Function	G-rich strand telomeric DNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSAPQP00000024928.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.