Gene detail

Detailed information of ENSAPQP00000024929.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: CAB3977812.1, von Willebrand factor D and EGF domain-containing [Paramuricea clavata]
Species Leptogorgia sarmentosa · all data for this species · gene families

Sequence

CDS

Transcript

ENSAPQT00000027764

ATATTGACCCGTCTATGCCAgacaaaaaatttaaaactggcGGTTTTCATTTAGAGCAAATACTAAAAGGACACGGAATCATAGAGAGGATTTATGCGAATAGCAGTCACTCCATATTTTACATCATTGGATTTGGTAGTCCATCACTATGTTATACTCATATCGTGAAGGATGAAACTTACTTGTTGTTTGCAATGTTTATACCAACTACGTTGACATTGTATGTGCCATTTGAGATACCATTTGGTGGTACAGCTGATCCAACCACTGAAAACGAAGATAAAGTTCTATCATCGCTGGGTTGGCAACCGTGGTCTGATTGGTCCTCGTGCTCTGTCACCTGCTCGGGCGGATGGGAAAGTAGAACAAGAATATGTCGGACAGGAAATTGTGAAGGGCCGACAACTTCAAAAAGAACCTGCAATAATTATGAATGTAGAGGCGTAACCAACGTATTGAAACCTTTCCAGTTACGTCGAAACACACGCAGTATTCCACCTCCTCCTAAGCACAGAAATGCTTTACAAATTAACAACTTGGGAAATATGTCCGTTCCAACACATCAAATATTCTGGAATAAATTTCCACGAAATTTCACCATGTTTGCAGCAGCAAAATACGTTAATTATACGGGAGGATATCTTATTAGTTTCTTTGACTCTCGCGATAGACTGCAGATTGGAATCAAAGTAAGTAAAACGTCAGTTGCGTTGGAGTATGCCCAGGCTGGGAAGAGAAATCAGTTTCTGGCGTTTAATGTGGAAGTTATGGACAGAAAATGGCATCGCTTTGCGTTCAGTGTTGGGAATGGTCTCGTCTCATTTTACCTGGATTGCCAGATGATTGGAACTCGAAATATTGCACAGGCAAATCTAAATAGTGTGGATAGGAATGGCAATGCTTATCTCAATGCAAAAGCTGAGTCGCCTGGAGAACAGAATAAAAACATAAAGTTTTACATTGAGGAGCTTTCTTTGTCTGAAGACGTAAGAGCTGGTCAGAAACAGTGCGAATTTAATGATCTTTATgAGGAGAAGGAAGTGTTTGAAGGATCAGGAGAAAAACCAGAAGATCTCGAGTACGATTGGTCTCCTTGGACAACTTGTACAAAAACATGCGGAGTAGGTGGTGTGAGACGTCGTGTCAAGTTATGTACCAGTGCATCATGGTTAACTTCACGAGACGAATGTCAAACTGTATTGCAACAGTCTGAGGAGGAACCATGCAATAACAAACCATGTCCTGGGAAGTGTCGACAACGATGCGTACACGGAATTTGTGCTGCGAAGAATAAATGCAAATGCAGGAGCAGTTACTACGGCGCTAATTGTCAGAACAAAAGAGCTTTACCCTGCAAAAGAAGCTGCAGCAATGGAGGTCGATGTTTAACTTACAAAGGAATCTGTAAATGCGCGAAAGGTTatactggaaaatattgtgAAAAAGCGACGTGTTTTCCACCTTGTCAGCAAGGAGGTGTTTGCATAAAACCTGGAGTGTGTACGTGTAGACCTGGATATATTCCACCACATTGTAAACCCGGTTGTCGGCAATCCTGTATGAACAAAGGACTTTGTATTTTGCCAAACAAGTGTCATTGCAGAAGAGGTTATATTGGCGATCGATGTCAATATGcTGTGTGTAAAAAGATGTGTTTAAATGGAGGAGTTTGTTATGACAATAATAAATGTAATTGTAAATCTGGCTGGACTGGAGATACATGTAACATTGCAATTTGTCATCCAAAATGCCAAAATGGAGGAGTGTGTAGATTGCCTAACAGGTGTTCTTGTCCAAACCAAACAAGTGGAACATATTGTCAGCATGCCAAAACGTCAGTGCTCTGATTTGGTGATTCAGGGATAATGAGGGATTGGTTAACAAATTACTCCTGCACATTTACACTTGTTTGGTATTCTTAGCCATTTTTACAAAGCAAAAGATGACAGAATCAAAATGAACTAGAAAGAACTTAAATTaaagacattgtgaaataagAACATTTTATAAATCGCATGCAAATTGACAGTCCAGTTAAAAAACACTGTTTGGGCTTGTGGACGATTAAATAATGTTAGGCTCTATAAACGGTCGTAATAAATAAACGTATATTGATGTAAAAAAAAGGTTTAGAGTTTGCTGCTAATTTTACAATGACAAGAAACAAAGTTGTTGACAACTGTAGCATTTTTTATGGTATAAGTTACGATATTAACATTTATAcctaaattaaataaaaatccAGAAAATCTCGACTTGGATTCATTATCCATAGAGGTGTATCAAAACGTGGCCTGCAGTGTATAGGCTGGCAGCGGGTTTCTCGAAAGGTTGAATGTTATtggtagaaattttgctgctttctGAACATAGCAAATAAGCCATCAGCTGCTGAAAAGACTTCTAGCTCATTCGGAAATATTTACTTGGTCGAAATTTTCTGTGTCCAGTACCAACATATTAGAAATGGTACGTATGATTGTTGTCTTGCCAGGTGGatgaaaaaacattcattgaaATTGTCTCTATTTATCAGCTGAAatacatttttcaacttttacgcTTAAAATAACAACAATGGGGATTTAATCTTCAGTAATTTTCTGAGATATTTACTTAAAGCATTCGAGCTGTCCCAGTCATGGTGGAACTCATTCAAGTGTCACCGCCTGGCTACAGGATAAAGGCCATACCACTACTTTCACTTAGTCGCGCTGTGAACGAATTATAGGCATGTTTAATAACTTTTTCTGAACACTTTCTGGCATGCAGACTTCGCGTGTTAGTTGTGTTACGGTAATGGTCATCCGAAATCTTATTATTTACA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q28178	Thrombospondin-1 OS=Bos taurus OX=9913 GN=THBS1 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002840 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00090 all species →	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000884 all species →	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR036383 all species →	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR008993 all species →	Homologous_superfamily	Tissue inhibitor of metalloproteinases-like, OB-fold	Interproscan
IPR050969 all species →	Family	Developmental Signaling Modulators	Interproscan
IPR048287 all species →	Domain	Thrombospondin-like, N-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14949 all species →	EGF-LIKE-DOMAIN, MULTIPLE 7, 8	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005102 all species →	Molecular Function	signaling receptor binding	Interproscan
GO:0005576 all species →	Cellular Component	extracellular region	Interproscan
GO:0009986 all species →	Cellular Component	cell surface	Interproscan
GO:0048856 all species →	Biological Process	anatomical structure development	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSAPQP00000024929.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.