Gene detail

Detailed information of ENSAPQP00000024987.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: XP_028395245.1, transcription factor CP2-like [Dendronephthya gigantea]
Species Leptogorgia sarmentosa · all data for this species · gene families

Sequence

CDS

Transcript

ENSAPQT00000027822

TGATCAAAGCCTGCGATTGGTCCCTGCGTGAACAGAAACAGACAAAATACTTAGCCGTGAATTTGTGTTTGCAGAGATTTTAGGCGAACATTTTAGCTAAGGTGAAATTTAGCTAAACAAATCTTAAAGTGAGTTTATTGGCGTATGTTTTTCGCAATTGGTCACAGCTTAATATCAGTGATAATATGTTTTTTTCAGTGTATTTTCTCCATGAATATTGTAGGTTTAGTTTTATTCTCATGGCTCCTACTTCATCGTCGAAAAAACTGAATGAAGACAGTATAACTTACCTCAATCAAGgtCAGTCGTATCTGGTTCGACTGATAGCGGTGTGGGATACTACATTTCTAAGTAATCATATTGTTAATgtTGTGGTGAAACTAGGATTTTATGAGCGTAAACTGCAAGTTATTGAGGGAGAAAAGTACGAAGAATGGTTGACCAACCGACCTGCTGAAAGACTTTTAGAAATCGaTGTTCCTATGTCTGTTGGTATTCTAAATCTAAGAAGTCAAAGCAGCTATACAAATGAATTGGAGTTTGAATGGGATACTCAAGTTGAAGCTCAAGTTTACATAAAGATTAACTGCGTGAGCTCAGAATTTACCAAAGGCAAAAGTGGAGGGGAAAGTGGTGTTCCGCTGAAATTACAGTTTGAGATCCAAGACACGAAATCACAAAGTGTAGTTCCTCTCTACTGCGCTGGATGTCAAATTAAAGTCTTTCGAACCAAAGGTGCTGACAGAAAACATAAAACAGAACTGTCAAAACTTGAACAATTATCAAACGAGGAAATGggACAATATCAACCACCATCGGACGTGACAGTTCTTACAGAGAATCTGGTGGAAAGTTCGGAAGAAAGACTTTGGTCATCCCCAACGAGTTCATATCAAAATTCTCTCAACTCATCTATTCAGTCACCACAAAGCTATTATTCTCCCGTATCCTCCTCCTCCTTACCGCTTTCTGCGCCAGagAGAATCACCAAAGATTCAACAGTAGATGAAACGAGAGCATGGCTGGCAGATAATCGTTTTCACACTATTATACCTCAgttaaataattatacagGTGCTGATATTCTACGCCTGAGTAAAAAAGACATTGTATTAATAGCTGGAAACGCTGAAGGCATTCGACTACATAACTTAATCCAAACAAGGGTGGCCAAACCGGTGTTAACGATGTACGTGTGTGTGGAGTCGATGCAAGACTCGTCAACGATGAAAGAATACCAAGCTGTATATTTGGAAACTTTGACTTTAAAAGCTCTCAAAGAAAAACTTGCTCAAAAATGCAATCTACAGAGTGATCAAATATCTGCTGTTTTTAGACAAGGCCCTACTGGTATCTCAATTCTTGTTAACGACGAGATGGTGGCTAACCTGGCTGATGAAATGTCATTTATCGTAGATGTCATCAGAGACGAACACAATAACTTGTGGAGAATTTTGCTAAAGTGAAGCTATGAATGAGTCAAATCTATAATGTAAATATTCTAAATACAGAGCAAAATACGGAATATTCGGCCTGGTCAGAATATGAATTTTTCAGGTGTTTATGAAGCAATAGCGATGAAATGGGATGAAACAATGGTTGGACAGGTATCAATGTTTCATTAACACTTGGAAAACTCAGTCTGTGCCAGTTCATATTTTACCGACCCTAGgggaaaagaagaaaagacaAGGTCAAAGATCTTTATTATACTTTGTATATATGGTcgttaaaaacagtttgattCTGAAGCGTATGAACAATACTAACGTACAGTAATATCGTATGTATAGTTCGCCTTGGGCCGACTACAAGTTCTACTTGAGTAGCGCCACTACAAAGCTTAGCGTCATACAGTAGCATTCCGTTAGCAATAAAGATGGCGAACGTACTGTACGGTTTTACCCACCGGGCTTACCAGAATGCAATCATTTCTCGATGGTCCCAATGCATTCTGGTACAATGTAcatccgccatcttttttttGGTTACAGTGAATTGTTGTtacaaatgtaaaaaaaaacacgataCAATATTTGTGATTGCAGATATGGAAACGAAAAGGTCTTTTAGTCGTACTAGATTTTGTGGCCGCAACATGTCATACGTGCACCCGCAAATGAAAGGCGTATAATTCGGCTTTCAGTTTTATACAACGAAGCACGTGACAAACAcgtacatatacatatactgaGTTTGGTGTTAAAGAAGGCTGGTCATGTCATTCCTTATGGATTCATACCTTCCTCTTTATGAATGCTGACCTAATCCATGCTCCAACGCAGACAAACCAGAAACATACATCTGTAACACGCCACACATCgttgcaacctcgtacccagagtCTTACCTAGGGAGTGGGCAATAGTAAGAGCATGGGTACGAGATTGGTCTGCGTTCTTTCATAGCAATTTTTTGTCAAACTTTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7T2U9	Transcription factor CP2 OS=Gallus gallus OX=9031 GN=TFCP2 PE=2 SV=1
Q12800	Alpha-globin transcription factor CP2 OS=Homo sapiens OX=9606 GN=TFCP2 PE=1 SV=2
Q6NZH6	Transcription factor CP2 OS=Xenopus tropicalis OX=8364 GN=tfcp2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003772 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04516 all species →	CP2	CP2 transcription factor	Family	Interproscan
PF18016 all species →	SAM_3	SAM domain (Sterile alpha motif)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007604 all species →	Domain	CP2 transcription factor	Interproscan
IPR040167 all species →	Family	Transcription factor CP2-like	Interproscan
IPR013761 all species →	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR041418 all species →	Domain	SAM domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11037 all species →	TRANSCRIPTION FACTOR CP2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0001228 all species →	Molecular Function	DNA-binding transcription activator activity, RNA polymerase II-specific	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSAPQP00000024987.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.