Gene detail

Detailed information of ENSAPQP00000025251.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: CAB3986208.1, General transcription factor IIF subunit 1 [Paramuricea clavata]
Species abbreviation LSARM · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3THK3	General transcription factor IIF subunit 1 OS=Mus musculus OX=10090 GN=Gtf2f1 PE=1 SV=2
Q04870	General transcription factor IIF subunit 1 OS=Xenopus laevis OX=8355 GN=gtf2f1 PE=2 SV=1
Q6AY96	General transcription factor IIF subunit 1 OS=Rattus norvegicus OX=10116 GN=Gtf2f1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005791 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05793 all species →	TFIIF_alpha	Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR008851 all species →	Family	Transcription initiation factor IIF, alpha subunit	Interproscan
IPR011039 all species →	Homologous_superfamily	Transcription Factor IIF, Rap30/Rap74, interaction	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13011 all species →	TFIIF-ALPHA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006367 all species →	Biological Process	transcription initiation at RNA polymerase II promoter	Interproscan
GO:0032968 all species →	Biological Process	positive regulation of transcription elongation by RNA polymerase II	Interproscan
GO:0001096 all species →	Molecular Function	TFIIF-class transcription factor complex binding	Interproscan
GO:0005674 all species →	Cellular Component	transcription factor TFIIF complex	Interproscan
GO:0016251 all species →	Molecular Function	RNA polymerase II general transcription initiation factor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSAPQP00000025251.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.