Gene detail

Detailed information of ENSAPQP00000025256.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: CAB3986208.1, General transcription factor IIF subunit 1 [Paramuricea clavata]
Species abbreviation LSARM · all data for this species · gene families

Sequence

CDS

Transcript

ENSAPQT00000028093

TCAACATTTTATTGTACAACATTAACTACTTTTGCTTTATTGTTGGTAATCATATGACATATTAAAAATTGGCAAGTTATTTTTGGGTATGAAGTATTAACGATGGTATGAATATGTAACCATCTTGCCGCGCCCAGTTGGTATCTGTGTTGGTATCGACCATTATATTAGACGTAACATGACGTATTGTCAaggttaaaaaacaaaatggcagaCAAAAAAGCTTCACTTTTATTACAAGGAGCAATTCCAGTCAAGCCAACATCAAGTTTTCTgtCAAAAGGATCCACCAGTGTTGGAAATAAATCAACAGTACCTTTTAATCCAGACAATTATAACTCATTTACTGTCAAAGTTCCAAAAGATGGTAAGAAACGTCACTCAATCATGAAGTTCAATACAAACATTGATGTGTCTGCTTTTACCAAGGTCCAAATGCAACGACAGAGGAATGCAGGAGAAACGAAAGAAGACGAAATGCCCAAGTTTGGCGCTGGAAGTGAATACGGCCGTGATCAGAGGATCGAGGCAAGGAGGAAAAAACGAGGTTAtcttaaaaaacaaataaaggaCGAAGATTTACCTTGGCTTTTGAAGACTGGCGGGCGGGGAGGAAAGACGTACAAAGGTGTGAAAGAAGCAACCATGGTTCAAAACGCAGCATATTACATATTTACTCAAGCGGATGATGGATCATTTGAAGCTCGTCCAGTTGACGCGCAATACAGATTCACTCCAGTTATAAACTATAGAACATTAACTGCTGATGAAGCAGAGGAAGAATTTTCGTTAAGAAATAAGACAATCAATTATTTCTCATTGATGGTAAAGAAACGACTCACTGATAcagaagaaaaaaatggcgaTGAAGAAATTGTAATTCCCAAGGTCAAACCTAAAGTTGACAAATTGCAAATCTACAATGATGATGATCTTGAAGATATGTCTGACGACGAAGGAGATGATGACCAGGAGCACGTGGATGAAGAAAAGTTTCAGAAAGCGAAGAAGAAATTAGGCAAGACAAAGAAATCAGAAAAGGAAGATGGTGGTAGTGATTTTGAGGAAATGGAGGATGGTTATGAAGATTCCAAAGAAAtggattactctgaaacatctTCCTCTGATGAAGAACTTGAGAAGAAGCGTGCTGACACGAAACCTCAGGCTGAAGATGACCTCAATGCACAACTTAATCCAGAAAGTGAAGACGATAGCGAACTTGAGGATGATAGATTAAGTAAAGGAGGATTATTATTGAAAGATATGTTAAAGCAGAATGATGATAGTTccgatgatgaagatgatgaagagaTTGATGAAGATCAAACTAAGTCTGCCGTATTATTGCAAGGTCAAAAAAAGAAAGGCAAGAAAACAGGAAGTGGTTCAAGTACATCATCAAGTAGTAGGTCTGATACTCCAACTAAAGGCATTGAAACCGCTGACAAAACTATTGCAGATGCTGCTAAGAAATTAAAAGATATAAGTTCACCAGTGGCAGGCAAAAAACGTCCTAAAAATTCTCCCAGTGATGAAACTCCAACTAAGAAAGCCCGTAAAGAAACTGACAGTCCAATCCATCGTTCAGCCAGTGGCAGTTCACTTGCATCACGTGCTCTAAATGAACCTGAGAGACCCGGGTCCCGGGGATCTCCAGAGGTTGGAATCACCGAGGAGGCAGTTCGCCGCTATCTTTCACATAAACCAATGACAACGAAGGATTtattaaagaaatttaaaacgaagaaaacaggTTTGACAAGTGAGCAAACTGTGCAACAGATTGCGGCCATATTAAAGAAGATAGTACCTGAACAGAAAATGATCAAAGGAAAATTGTACCTATCGTTAAAAAGAAGTTAGTTTGTCTTGGGATGTAAACAAAACGTCTCATTCTGGGTCACATGGCAAAGTTTATACAAGCAGCCCCCTTAATGATGACAGTCTGGGGTTGGTTGTCTGTAAAGTGAAAAATGCTGCTTAGATGATGATATCAACCGCAAAAAATTCTTGCAAAAGCCTTTTAGCCACAGATAACGGGTGGGATTCATTATTAATAAAACGAAACTTTTATTAGAAATACTGAAATTTAAACTGGTTATACCAGTAAATAGACAATTCtagaaagtttgaaaaactCCATCTACACTTCGTACAACTGTGTCCTACAGGTCAGCTAAATAGTACTGTTTGTGCTCTGGGTTACACAAAGTATctctattatttttaaatacatataattatgtaaaataaAGCCAAACATTTGGATGTTAATTTAGTTGTAGTTGAGACATCGTTTTCTTTGTAAATACAATAAACTAGAGCAGTGTCAAAACGATGAATCGCAACATTTGCAATGCGGGAAACATGGGAATAAAAGTAACTGCATTCCAGGATTATTGCTCAAAAATACAAAGAATGATCCACGTCCAAGGCAAAAATGAATCGTGTATGTCGTCGATTCATATGTCGATTCTCGCCGTTAATGAGTGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3THK3	General transcription factor IIF subunit 1 OS=Mus musculus OX=10090 GN=Gtf2f1 PE=1 SV=2
Q04870	General transcription factor IIF subunit 1 OS=Xenopus laevis OX=8355 GN=gtf2f1 PE=2 SV=1
Q6AY96	General transcription factor IIF subunit 1 OS=Rattus norvegicus OX=10116 GN=Gtf2f1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005791 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05793 all species →	TFIIF_alpha	Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR008851 all species →	Family	Transcription initiation factor IIF, alpha subunit	Interproscan
IPR011039 all species →	Homologous_superfamily	Transcription Factor IIF, Rap30/Rap74, interaction	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13011 all species →	TFIIF-ALPHA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006367 all species →	Biological Process	transcription initiation at RNA polymerase II promoter	Interproscan
GO:0032968 all species →	Biological Process	positive regulation of transcription elongation by RNA polymerase II	Interproscan
GO:0001096 all species →	Molecular Function	TFIIF-class transcription factor complex binding	Interproscan
GO:0005674 all species →	Cellular Component	transcription factor TFIIF complex	Interproscan
GO:0016251 all species →	Molecular Function	RNA polymerase II general transcription initiation factor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03138	TFIIF1, GTF2F1, TFG1; transcription initiation factor TFIIF subunit alpha	-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.