Genomic Location: not available for this species
NR annotation: CAB3982549.1, exosome complex component rrp40 [Paramuricea clavata]
Species Leptogorgia sarmentosa · all data for this species · gene families
| CDS |
| ENSAPQT00000028301 |
| Transcript |
| ENSAPQT00000028301 |
| Protein |
| ENSAPQP00000025462.1 |
| UniProt accession | Description |
|---|---|
| Q7TQK4 | Exosome complex component RRP40 OS=Mus musculus OX=10090 GN=Exosc3 PE=1 SV=3 |
| Q3T0E1 | Exosome complex component RRP40 OS=Bos taurus OX=9913 GN=EXOSC3 PE=2 SV=1 |
| Q9NQT5 | Exosome complex component RRP40 OS=Homo sapiens OX=9606 GN=EXOSC3 PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0006819 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF15985 all species → | KH_6 | KH domain | Domain | Interproscan |
| PF21262 all species → | RRP40_S1 | Exosome complex component RRP40, S1 domain | Domain | Interproscan |
| PF18311 all species → | Rrp40_N | Exosome complex exonuclease Rrp40 N-terminal domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036612 all species → | Homologous_superfamily | K Homology domain, type 1 superfamily | Interproscan |
| IPR049469 all species → | Domain | Exosome complex component RRP40, type I KH domain | Interproscan |
| IPR012340 all species → | Homologous_superfamily | Nucleic acid-binding, OB-fold | Interproscan |
| IPR004088 all species → | Domain | K Homology domain, type 1 | Interproscan |
| IPR026699 all species → | Family | Exosome complex RNA-binding protein 1/RRP40/RRP4 | Interproscan |
| IPR037319 all species → | Domain | Rrp40, S1 domain | Interproscan |
| IPR041054 all species → | Domain | Exosome complex exonuclease Rrp40, N-terminal domain, eukaryotes | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR21321 all species → | PNAS-3 RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003723 all species → | Molecular Function | RNA binding | Interproscan |
| GO:0000176 all species → | Cellular Component | nuclear exosome (RNase complex) | Interproscan |
| GO:0000177 all species → | Cellular Component | cytoplasmic exosome (RNase complex) | Interproscan |
| GO:0000178 all species → | Cellular Component | exosome (RNase complex) | Interproscan |
| GO:0000467 all species → | Biological Process | exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | Interproscan |
| GO:0034427 all species → | Biological Process | obsolete nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' | Interproscan |
| GO:0034475 all species → | Biological Process | U4 snRNA 3'-end processing | Interproscan |
| GO:0043928 all species → | Biological Process | obsolete exonucleolytic catabolism of deadenylated mRNA | Interproscan |
| GO:0071034 all species → | Biological Process | CUT catabolic process | Interproscan |
| GO:0071035 all species → | Biological Process | nuclear polyadenylation-dependent rRNA catabolic process | Interproscan |
| GO:0071038 all species → | Biological Process | TRAMP-dependent tRNA surveillance pathway | Interproscan |
| GO:0071051 all species → | Biological Process | poly(A)-dependent snoRNA 3'-end processing | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K03681 | RRP40, EXOSC3; exosome complex component RRP40 | - | Messenger RNA biogenesis | ko03019 | deepkoala |
