Gene detail

Detailed information of ENSAPQP00000025583.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: CAB3996786.1, sequestosome-1 isoform X2 [Paramuricea clavata]
Species Leptogorgia sarmentosa · all data for this species · gene families

Sequence

CDS

Transcript

ENSAPQT00000028428

AACACAATCAAAACAGAAAGTAATATGACATAATCAAAATGTGGAAGACTATTTAAAGAGCAgtggttttgttattgtgaaCATTCACTTTAAATACAAGAAGCACTAAAGAAGGCAAGATTGCAGTTCCAAAAATGTCTGTGACTGTGAAGACATACCTAAACTTTTCTAGCAGCGAACCAGAGATTCGACGATTCGCTATCGATACAGATGCCTCGACAAGCTACGATTATCTAGTGGAAAAAATTCGAAGCGTCTATCCTAAATTGACGAGGGAAGATTTTCAGCTGTTTTGGAAAGACGAAGAGAATGAATTTGTTGTTTTCTCAAGTGATGAAGAATTGATCGACGCATTGACTCAACATCAAGGAGGATTTTTCAGAGTCTACGTCAAAGTGGTGTCAAAGACATCAGGGGATGGTGAAGGTCAAGTTCATCCTCTTGTTACATGTGATGGATGTGAGGGGAAAGTTGTTGGATCGAGATTCAAATGTTCAGTCTGTCCTGACTATGACCTGTGTAGTTGTTGTGAAGGTAAAGGTCTTCATGCCCATCATCAGTTGCTAAGAATCCGCAACCCTGGTCCACCCTCTTTCAACCATCCATGCCCACCATGGTTCATGCCATGGGTACATGGCAGGGGCATGGGTCCGAGAGGTGGTTGGGGTGGCCCAAGAGGTGGTTGGGGTGTCCCAAGAGGTGGTTGGTGTGGCCCAAGAGGTGGTCGTCAAGGTGGTGGTCCATTCAATCGTGGAGGCCGTGGTGGAAAGGGGTGTCCACGATTCCCAGGAGGTACTGGTCCAGGACCAAATCAGTCTCAGTCTGATACCTCTGAAGAAGGTGCTGCATTTTTCCACCAATTTGGCGAAACTCTCAATTCTTTCCTGAGACCATTTGGCGTGGATGTTCATACTTATGTTGATGACAATCAAGGTGGCTGTGGACAACATGAAGGTGGAAAATCACCCAACTCGGGACAAGGTGAAACATCAAAACCAGATGACAAGGATAATGAAGAAGccatgGATGAAGCCAGCAATGGTTCGTCTCACGGTGGTGACCATACTTACGTAGTTGTTGATGAAACAACTGAAGATGGCAAGAGTTCTGAGGATCCATTGACAAATGCTCTGGCTTACATGAAGGCAATGGGCTTCAATGATGAAGGTGGATGGCTCACTCAATTGTTGAAGGCAAAAAATTATGACATAAATAAAGTCCTTGATACCATTCAACATCCAGAGAAGAAAGCTTaaacaagaaaacattttttgaaacttcaACGCTTTACGGAGCTCTGTAATATCATTAGCCTATTACAAAATTTAACTGTCTGCAACTTAAGCTGACGTATGTCATTGTGACTGATAATATATGTGCATATACATGTAGACCTGTCAACTGTAGAATATTCTTGAAAAAATAGCTAGCTGACTACATTATCGGGGAATTCCAGTCGtcgcaaaaatattttctgtacaGCGCAATACCAAAATGTACAATGTTACCACTAACTACGAGTGAACAGCGAACGTGGCCAGTAACCTTGGGTATTACtgactacctaaacgatacaattgaatcttattgtatcatttaggtagtgagtaaaacccTTGCTCCAGTTTACTGCTGTGTGCAATTTATGTTAATCCTGTCCGATTGACGTGTTTTATATCATTGCCTGTTTCCATTGAGTGACAACCTACATCACCCCATGCTGTCAAACTCCAAATGTAATCAGCTACtttcaaaaaaaagttaaaaaagaatcaaagtatttcaaaaataatgaatggcaatttgtaaaaaatatatatcatattCTATAACAAGTATCAATCGTGTATTTCCTTTGCTAACTACTAGTGTTAGTGTAGTTTTtcatttataaactatatacatttttgaaaccgaaaactatttacaaaacggTGATTCTTACAAAACTCCAATTAGTTGAACAAGATTGCGACTTCGTAAGTTAGTTTGGTGATCTGACACACCACTGTTGTTCATTCCAGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O08623	Sequestosome-1 OS=Rattus norvegicus OX=10116 GN=Sqstm1 PE=1 SV=1
Q64337	Sequestosome-1 OS=Mus musculus OX=10090 GN=Sqstm1 PE=1 SV=1
Q13501	Sequestosome-1 OS=Homo sapiens OX=9606 GN=SQSTM1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003508 (this species only)
Ubiquitin family	ULD\|UFD\|PB1 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16577 all species →	UBA_5	UBA domain	Domain	Interproscan
PF00569 all species →	ZZ	Zinc finger, ZZ type	Domain	Interproscan
PF00564 all species →	PB1	PB1 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR052260 all species →	Family	Autophagy Receptor and Signaling Regulator	Interproscan
IPR000433 all species →	Domain	Zinc finger, ZZ-type	Interproscan
IPR043145 all species →	Homologous_superfamily	Zinc finger, ZZ-type superfamily	Interproscan
IPR033741 all species →	Domain	Sequestosome-1, UBA domain	Interproscan
IPR034866 all species →	Domain	Sequestosome-1, PB1 domain	Interproscan
IPR000270 all species →	Domain	PB1 domain	Interproscan
IPR009060 all species →	Homologous_superfamily	UBA-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15090 all species →	SEQUESTOSOME 1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000423 all species →	Biological Process	mitophagy	Interproscan
GO:0005080 all species →	Molecular Function	protein kinase C binding	Interproscan
GO:0007032 all species →	Biological Process	endosome organization	Interproscan
GO:0016235 all species →	Cellular Component	aggresome	Interproscan
GO:0035973 all species →	Biological Process	aggrephagy	Interproscan
GO:0044753 all species →	Cellular Component	amphisome	Interproscan
GO:0070530 all species →	Molecular Function	K63-linked polyubiquitin modification-dependent protein binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14381	SQSTM1; sequestosome 1	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.