Gene detail

Detailed information of ENSAPQP00000025702.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: XP_028403385.1, splicing factor 3B subunit 1-like isoform X2 [Dendronephthya gigantea]
Species abbreviation LSARM · all data for this species · gene families

Sequence

CDS

ENSAPQT00000028575

ATGTACTTTGCTTTGAGTTTGAAGACGCCTGATCCTTCACAGAGGACAGGAAGAAGCTATGCCGAAATCCTGATGGATCAACGGTTGAGAAAAGAAGAGGTCGAAACTAGGAAGGAAATTCTAGACAAGGCTAAATCTGGAGAACTTCAAGTTCAACCTCAGGCAAAGCCCGCTGCGGAGAAGAAAAGGCGACGTTGGGATCAACAAGGAGGTGACGATGCCCCAGCCGCGAAGAAGAAATCTGGTACTTGGGATCAGCCTGAGACACCGTCTGCAAGTCGCTGGGACGAAACTCCAGGTCGACCTAAAGGCGGGGAGACACCAGGTGGGGGTACCCGGTGGGATGAAACGCCTGGGCGTTCTAAAGGAAGTGAAACACCTGGTGGAAGTACAACCCCACATCGAGGCTCAGAAACCCCTGGTGCTACACCCAGTGCAAGAATGTGGGAAGCTACACCAAGTCATGCCACTCCTGGATCTGCTACACCCGGAGGTATGACTCCAGGACATTCAACACCAGGTGTGTCAACGCGTCGTAACAGGTGGGATGAAACACCAAAAACAGATCGTGGTACACCAGGCCATACAACACCCGGGCAATCTACACCAGGTTGGGCTGAGACACCGCGAACAGACCGCACTGGTGCACAAACACCAGGAGCTACGCCAACACCTGGAAGTAAACGACGATCAAGGTGGGATGAAACACCGTCGGCTCAAATAGGTGGTACTACACCCATGATTGGTCCAAGCGGGGTTACACCTGCTGGACCACAAGCCATGCAGATGGCTACTCCCACACCAGGCCAAATGATACCAATGACGCCCGAACAAAGACAAGTATTTAGATGGGAAAGAGAAATCGATGAAAGAAACAGGCCTCTGACTGATGATGAACTGGATGCTATTATGCCTAAGGATGGGTACAAGGTGTTAGATCCACCACCCGGATATCAACCATTGCGTACTCCTTCTCGTAAACTTACAGCTACTCCAACTCCAATGGGATTCAGTGGCTTCACAATGCAGACCGAGGACAGAAATGCAAAACTGGTTGAAGACCAACCTCCAGGAAATTTGCCGTATCTTAAGCCCGATGACGTtcaatattttgacaaattattGgttgatgttgatgaaacTACACTAAGCGCTGAAGAGCAAAAGGAGAGAAAGATCATGaaattattgttgaaaattaAGAATGGAACTCCACCCATGAGAAAGGCTGCTTTAAGGCAAGTTACTGACAAAGCTCGTGAATTTGGAGCTGGTCCATTATTTAATCAAATTCTGCCGTTGTTGATGTCACCTACTCTGGAAGATCAGGAACGTCATTTATTGGTCAAAGTTATTGATCGTATTCTATATAAACTTGATGACTTGGTTCGACCGTTTGTCCACAAGATTCTCGTGGTTATTGAACCCTTGTTGATTGATGAAGACTACTATGCCAGAGTGGAGGGGagagaaatcatttcaaatttgGCGAAGGCAGCAGGTTTGGCAACCATGATTTCAACAATGCGACCTGATATTGATAACATTGATGAATACGTTCGTAACACAACAGCCAGAGCGTTTGCTGTGGTAGCTTCAGCTTTGGGTATTCCGTCTTTACTTCCGTTTCTGAAAGCTGTGTGTCGCAGTAAGAAATCGTGGCAAGCACGTCATACTGGCATTAAAATTGTACAACAGATTGCTATCCTGATGGGTTGTGCTATACTGCCACATCTGCGAAGTTTGGTTGAAATCATCGAGCATGGACTTGTGGATGAACAGCAAAAAGTGCGGACAATCACAGCTCTTGCTTTGGCAGCTTTGGCTGAAGCTGCAACACCTTACGGTATCGAGTCTTTTGACAGTGTTCTCAAACCTTTATGGAAAGGTATCAGACAACACAGAGGAAAGGGTTTGGCTGCCTTCCTGAAAGCTATTGGTTATCTTATACCTTTGATGGACGCAGAATATGCTAATTACTATACCAGGGAAGTGATGTTGATTTTGATTCGAGAGTTCCAGTCTCCCgatgaagaaatgaagaaaattgtgTTAAAGGTAGTGAAGCAATGTTGTGCGACAGATGGTGTGGAACCACAGTACATCAAAGATGAAATTTTACCGGAATTCTTCAAGCATTTCTGGCAGCATCGAATGGCTTTAGACAGACGTAACTACAAACAACTGGTGGACACAACTGTAGAACTCGCAAATAAAGTCGGTGCCTCGGATATCATTGGCCGAGTGGTCGATGACTTGAAGGACGAGAATGAGCAGTACAGAAAAATGGTTATGGAGACAATCGAAAAGatCATGGGTAACCTAGGCGCATCAGATATTGATTCTCGGCTGGAAGAACAATTGATTGATGGTATACTGTACGCGTTTCAAGAACAGACTCAGGAGGACATTGTTATGTTGAACGGTTTTGGGACGGTGGTGAACGCCCTGGGTAAGCGTGTCAAGGCATATCTTCCACAGATCTGTGGTACAGTATTGTGGCGACTGAACAACAAGTCTGCAAAAGTTCGTCAACAAGCTGCTGATCTTATCTCGCGTATTGCACAAGTTATGATGACTTGTGGTGAGGAAAAATTGTTGGGTCATTTGGGTGTTGTATTGTATGAGTATCTTGGTGAAGAATATCCAGAGGTGTTGGGAAGTATACTTGGCGCCATCAAGGCCATTGTGAATGTTATTGGTATGAACAAGATGCAACCGCCAATCAAGGATTTATTGCCAAGGTTAACTCCTATATTGAAAAACAGACATGAAAAGGTTCAAGAAAACTGCATTGACTTGGTTGGTCGTATTGCTGATCGTGGTGCCGAACACGTTAACGCGAGGGAATGGatgagaatttgctttgaattgcTCGAATTATTAAAGGCACATAAGAAGGCAATTCGGCGAGCTGCTGTGAACACGTTTGGTTATATTGCTAAGGCTATTGGACCTCAAGATGTATTGGCTACACTGCTAAATAACCTGAAAGTACAAGAACGTCAAAATCGTGTGTGCACGACAGTCGCTATTGCTATTGTTGCCGAAACATGTTCACCATTTACTGTATTGCCCGCTCTGATGAATGAATACAGGGTGCCGGAATTGAATGTTCAAAATGGTGTGCTTAAATCGTTGTCCTTCCTGTTTGAGTATATTGGTGAGATGGGCAAAGACTATATCTATGCTGTTACGCCACTTTTGGAAGATGCATTGATGGATAGGGATTTGGTACACAGACAGACAGCATGTTCAGCGATCAAACACATGTCATTGGGAGTATTTGGGTTTGGTTGTGAGGATGCATTAGCTCACTTGCTTAACTACGTTTGGCCAAATATCTTCGAAACGTCACCTCATGTTATCAACGCTGTAACAGAAGCAATCGAAGGCATGAGAGTGGCACTGGGAGCCCCGAAAGTTTTGCAATATGCACTACAGGGTCTTTTCCATCCTGCTCGTAAAGTTCGAGATGTCTACTGGAAGATCTACAACACACTGTATATTGGTGCACAGGATTCTCTTGTTGCGGGATATCCAACAGTCGCTGatgatgataaaaatacatttgTGAGGGGAGAGTTGATGTACTTTTTATAG

Transcript

ENSAPQT00000028575

CCAGCTGGGATAAGCAAGAAAATTTAGACACATGATGTCAGTGGGTGATTTCGTTGCATACCTCTCAAATATGTGTTATAACGTTCATAAACAACTGCAGTCCCCTTTGATTTTACGAACTGGAACCAAGTTTTGAACAGTGGCAATACAATGTATTTATCACTGGCATCAAATCTAGTATTTTGTTGCTTATCCAAGATAACACTCTACCAAGATAACCCTTACCCCAATAACTTAATATACTATAGCTGTAAGATACCGTATTTATTTACCTTTTACAGTGTAATCATCTTTTATTAATGTACTTTGCTTTGAGTTTGAAGACGCCTGATCCTTCACAGAGGACAGGAAGAAGCTATGCCGAAATCCTGATGGATCAACGGTTGAGAAAAGAAGAGGTCGAAACTAGGAAGGAAATTCTAGACAAGGCTAAATCTGGAGAACTTCAAGTTCAACCTCAGGCAAAGCCCGCTGCGGAGAAGAAAAGGCGACGTTGGGATCAACAAGGAGGTGACGATGCCCCAGCCGCGAAGAAGAAATCTGGTACTTGGGATCAGCCTGAGACACCGTCTGCAAGTCGCTGGGACGAAACTCCAGGTCGACCTAAAGGCGGGGAGACACCAGGTGGGGGTACCCGGTGGGATGAAACGCCTGGGCGTTCTAAAGGAAGTGAAACACCTGGTGGAAGTACAACCCCACATCGAGGCTCAGAAACCCCTGGTGCTACACCCAGTGCAAGAATGTGGGAAGCTACACCAAGTCATGCCACTCCTGGATCTGCTACACCCGGAGGTATGACTCCAGGACATTCAACACCAGGTGTGTCAACGCGTCGTAACAGGTGGGATGAAACACCAAAAACAGATCGTGGTACACCAGGCCATACAACACCCGGGCAATCTACACCAGGTTGGGCTGAGACACCGCGAACAGACCGCACTGGTGCACAAACACCAGGAGCTACGCCAACACCTGGAAGTAAACGACGATCAAGGTGGGATGAAACACCGTCGGCTCAAATAGGTGGTACTACACCCATGATTGGTCCAAGCGGGGTTACACCTGCTGGACCACAAGCCATGCAGATGGCTACTCCCACACCAGGCCAAATGATACCAATGACGCCCGAACAAAGACAAGTATTTAGATGGGAAAGAGAAATCGATGAAAGAAACAGGCCTCTGACTGATGATGAACTGGATGCTATTATGCCTAAGGATGGGTACAAGGTGTTAGATCCACCACCCGGATATCAACCATTGCGTACTCCTTCTCGTAAACTTACAGCTACTCCAACTCCAATGGGATTCAGTGGCTTCACAATGCAGACCGAGGACAGAAATGCAAAACTGGTTGAAGACCAACCTCCAGGAAATTTGCCGTATCTTAAGCCCGATGACGTtcaatattttgacaaattattGgttgatgttgatgaaacTACACTAAGCGCTGAAGAGCAAAAGGAGAGAAAGATCATGaaattattgttgaaaattaAGAATGGAACTCCACCCATGAGAAAGGCTGCTTTAAGGCAAGTTACTGACAAAGCTCGTGAATTTGGAGCTGGTCCATTATTTAATCAAATTCTGCCGTTGTTGATGTCACCTACTCTGGAAGATCAGGAACGTCATTTATTGGTCAAAGTTATTGATCGTATTCTATATAAACTTGATGACTTGGTTCGACCGTTTGTCCACAAGATTCTCGTGGTTATTGAACCCTTGTTGATTGATGAAGACTACTATGCCAGAGTGGAGGGGagagaaatcatttcaaatttgGCGAAGGCAGCAGGTTTGGCAACCATGATTTCAACAATGCGACCTGATATTGATAACATTGATGAATACGTTCGTAACACAACAGCCAGAGCGTTTGCTGTGGTAGCTTCAGCTTTGGGTATTCCGTCTTTACTTCCGTTTCTGAAAGCTGTGTGTCGCAGTAAGAAATCGTGGCAAGCACGTCATACTGGCATTAAAATTGTACAACAGATTGCTATCCTGATGGGTTGTGCTATACTGCCACATCTGCGAAGTTTGGTTGAAATCATCGAGCATGGACTTGTGGATGAACAGCAAAAAGTGCGGACAATCACAGCTCTTGCTTTGGCAGCTTTGGCTGAAGCTGCAACACCTTACGGTATCGAGTCTTTTGACAGTGTTCTCAAACCTTTATGGAAAGGTATCAGACAACACAGAGGAAAGGGTTTGGCTGCCTTCCTGAAAGCTATTGGTTATCTTATACCTTTGATGGACGCAGAATATGCTAATTACTATACCAGGGAAGTGATGTTGATTTTGATTCGAGAGTTCCAGTCTCCCgatgaagaaatgaagaaaattgtgTTAAAGGTAGTGAAGCAATGTTGTGCGACAGATGGTGTGGAACCACAGTACATCAAAGATGAAATTTTACCGGAATTCTTCAAGCATTTCTGGCAGCATCGAATGGCTTTAGACAGACGTAACTACAAACAACTGGTGGACACAACTGTAGAACTCGCAAATAAAGTCGGTGCCTCGGATATCATTGGCCGAGTGGTCGATGACTTGAAGGACGAGAATGAGCAGTACAGAAAAATGGTTATGGAGACAATCGAAAAGatCATGGGTAACCTAGGCGCATCAGATATTGATTCTCGGCTGGAAGAACAATTGATTGATGGTATACTGTACGCGTTTCAAGAACAGACTCAGGAGGACATTGTTATGTTGAACGGTTTTGGGACGGTGGTGAACGCCCTGGGTAAGCGTGTCAAGGCATATCTTCCACAGATCTGTGGTACAGTATTGTGGCGACTGAACAACAAGTCTGCAAAAGTTCGTCAACAAGCTGCTGATCTTATCTCGCGTATTGCACAAGTTATGATGACTTGTGGTGAGGAAAAATTGTTGGGTCATTTGGGTGTTGTATTGTATGAGTATCTTGGTGAAGAATATCCAGAGGTGTTGGGAAGTATACTTGGCGCCATCAAGGCCATTGTGAATGTTATTGGTATGAACAAGATGCAACCGCCAATCAAGGATTTATTGCCAAGGTTAACTCCTATATTGAAAAACAGACATGAAAAGGTTCAAGAAAACTGCATTGACTTGGTTGGTCGTATTGCTGATCGTGGTGCCGAACACGTTAACGCGAGGGAATGGatgagaatttgctttgaattgcTCGAATTATTAAAGGCACATAAGAAGGCAATTCGGCGAGCTGCTGTGAACACGTTTGGTTATATTGCTAAGGCTATTGGACCTCAAGATGTATTGGCTACACTGCTAAATAACCTGAAAGTACAAGAACGTCAAAATCGTGTGTGCACGACAGTCGCTATTGCTATTGTTGCCGAAACATGTTCACCATTTACTGTATTGCCCGCTCTGATGAATGAATACAGGGTGCCGGAATTGAATGTTCAAAATGGTGTGCTTAAATCGTTGTCCTTCCTGTTTGAGTATATTGGTGAGATGGGCAAAGACTATATCTATGCTGTTACGCCACTTTTGGAAGATGCATTGATGGATAGGGATTTGGTACACAGACAGACAGCATGTTCAGCGATCAAACACATGTCATTGGGAGTATTTGGGTTTGGTTGTGAGGATGCATTAGCTCACTTGCTTAACTACGTTTGGCCAAATATCTTCGAAACGTCACCTCATGTTATCAACGCTGTAACAGAAGCAATCGAAGGCATGAGAGTGGCACTGGGAGCCCCGAAAGTTTTGCAATATGCACTACAGGGTCTTTTCCATCCTGCTCGTAAAGTTCGAGATGTCTACTGGAAGATCTACAACACACTGTATATTGGTGCACAGGATTCTCTTGTTGCGGGATATCCAACAGTCGCTGatgatgataaaaatacatttgTGAGGGGAGAGTTGATGTACTTTTTATAGCTTCGTCATaacaaaacaatgtaaaaAGTATGAAAATAGAGAGTTGCATGCATACAATTAGGAACGTAAGAAACGCCTTAACATACGGGCTCTTTCACTATACCTGtaaaattatagcaaaatgtAAAACCTTGTTCTCAGAGTACTGTAGGAACTAGTTTGTAATGGGGAATAGTAAACAGGCAAAATCTGCGCAAAACCCATACTGCTGCTGTTCAATTGTTGTATGAATATACTTCTCATATTAAAGAAAATACACAATCTCATGTGTTCGTGCACGCTGTGTAACATTCTCACAAAACCAAAATTATTAGTGAAC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O75533	Splicing factor 3B subunit 1 OS=Homo sapiens OX=9606 GN=SF3B1 PE=1 SV=3
Q99NB9	Splicing factor 3B subunit 1 OS=Mus musculus OX=10090 GN=Sf3b1 PE=1 SV=1
O57683	Splicing factor 3B subunit 1 OS=Xenopus laevis OX=8355 GN=sf3b1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004777 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20926 all species →	Htt_N-HEAT_1	Huntingtin, N-terminal HEAT 1	Repeat	Interproscan
PF08920 all species →	SF3b1	Splicing factor 3B subunit 1	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR034085 all species →	Domain	TOG domain	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR038737 all species →	Family	Splicing factor 3B subunit 1-like	Interproscan
IPR048411 all species →	Repeat	Huntingtin, N-terminal, HEAT repeats 1	Interproscan
IPR015016 all species →	Domain	Splicing factor 3B subunit 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12097 all species →	SPLICING FACTOR 3B, SUBUNIT 1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000245 all species →	Biological Process	spliceosomal complex assembly	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005686 all species →	Cellular Component	U2 snRNP	Interproscan
GO:0005689 all species →	Cellular Component	U12-type spliceosomal complex	Interproscan
GO:0071004 all species →	Cellular Component	U2-type prespliceosome	Interproscan
GO:0071013 all species →	Cellular Component	catalytic step 2 spliceosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12828	SF3B1, SAP155; splicing factor 3B subunit 1	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.