Gene detail

Detailed information of ENSAPQP00000025846.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: CAB4031279.1, Hypothetical predicted protein, partial [Paramuricea clavata]
Species Leptogorgia sarmentosa · all data for this species · gene families

Sequence

CDS

Transcript

ENSAPQT00000028764

AGTTAAAACTCACTCCCATGACTGTCTCTCTATTTAGACGggttgaataaaatatatgtCATGTGAAACCAAGGAACTGGTGCGTGGTTTGTTTACACCAGGTTCCACTAGTCGTAACTCGCAAGAATCCTGATCTACCGTGCCGTCAGATTttcccagccttttactgacAAGTACTGTTTGCATACCGTCATGCAATGCAACGAACAATTTACAGATCTGCTTTTGAATGATGGAAAACAGTTATCTGACTCATCACAATCCAAGGACGTACCATGAAAATATAAGCTGTATAAAATATGAGTTGGGGCAATTTGTTTGGATTTTCTGGATCAAAGGACAAACATGTACCTGTTTTAAACGCCCTAGAACAACAAAGAGTGAAGCAAATTGAAAGTTTAAGAACATTTCATCCAAGTGTGacagaaattcaaaaaaatgtcaaattcaagattacaatttttattgaaGAGAAAGCTGTACACCTCCATGTGTTTTTACCACCAAACTTCCCCAATGAAATTCCAGTTGTTACAGTTTCACCTGCCATGACACATCCTTGGATTAATAACCAGATGGTTGTGACTGGATGTGATTCCTTAAACCAAttttacaTGCACTCAAATTTAGGACGAACTTTACAAGATGTGTGTAAGGAGTTGATTGACAATCCTCCTACGTTTATTCAGTATAACAATTATCCTCCTGTTAGTTCATCTCATTCATACATTCAACCTACAGTGGAGGACATCAAAGATCCTCCAGTTTCAGAGACACTGGTTCAAACAGAGGACAATGATGAAACGAAAGACAAGCTGGAAGGTTTCTCAAAAATCTCTCAGATATTGGACAATTGCAGTATTGACGAGTTGAAAGATTTAGACAGTAACCCCGAGAAGCTAATGAAACTCATTTTTGAGACAGACTTGATAAACTCCAGTGCAAGAAACAGGGAGGATGAAATGATCAGACTAGAAAAAATTGCAGAAGAAAATTTAGGGCAAGGACCAAAATTAAACGAAGCAAGGCAAAGGCTATTTGATAAATACGCCACACTATCTCAATTACGACATGAATTTGATCAATGGTCTTCGAAACAAAACGATCTTCTTGAGTCGCGTACACCAGACATGTTACATCTTGCTCTGCAACTTGGGGTGTCAGAAATGGATGAGAAATCCGAGAAAGTGGCAGAACAGTTTTTAAACGAAAACTTGGAAATTGAGGAGTTTATAAGAATGTTTACAGAAAAGCGAAAGCTAACGCATATTCGTCACTGGAAACAAGAAAATGTTCGTAGACTCTGAAATGTTATGGCGGCTCTCTTCTCCGACGTGATGGACATCGGATTGACAAAAATGAACATCCATAGGATTCCACTTATCCAGATCGTGATCATCATAGAAACCTGCATGTAGTTTCATAGAAACTTTTAGTTTCATAGACTGAACTTGTAGTTTCATAGAAACTTGTAGTTTCATAAAAACCTGTAGTTTCGTAGAAACCTGTCTATTTATTgttgattatttttataacagtCAAGGTATAAATGAAATAGACAAGAACATTATTTCCACTAGGCTATATTTTTGTAACCAAATGAATTTTTCTACATATATAGTTTTTGgagaaaataatatatatacaattgtttacaataataataatattcatcACTTTATTATTAACACAATATAATTGATGCTTATAGCTTGTGTGGTCAGGGCATTTAATTCATAAACTGTAGGTGCCCCACAGTTTTGAGGAAATATATAGCAATAGAAATATATCAAGCGACCTTGACAAATAATGATATTCAAACATTTTACAATAATACAAACAGGAATTTCTCGTATATACATATAGATGGTCTGTGCAAAACCGGTCCAACATATTGGGTCCACCTCCTACACATTTTTCAATGCAATTGTGGATCTAAATATTTATGCATGTTCGGTTTTTTGGAAGCAATATGTTGGATCGTATTCAGCACCACTAACATGTTGATTGATTTTCTAAAATCACCGAGCCTAGTAAATGAACCCCATAAATAATGTACATATAACTATTTTAACTTTATAAATCTAACTAGAAACACGAGCGTATTAACGTACTGTATATGAACATTTTGCGCTCCACAAAACACTGCAGGAAAAATGATTTCGGTTTTTTACTTGCGATTTTAGTGACAATCTGACCTAAAATGATGTAAAACCTCGCGGTTTAAACGtagaaatatatttgtttgttCTGTACATATCGTTCTCATTTTTTTGCCGAGACTAAAATCGTCAAAGCTTAATTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8NEZ2	Vacuolar protein sorting-associated protein 37A OS=Homo sapiens OX=9606 GN=VPS37A PE=1 SV=1
Q8CHS8	Vacuolar protein sorting-associated protein 37A OS=Mus musculus OX=10090 GN=Vps37a PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006931 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07200 all species →	Mod_r	Modifier of rudimentary (Mod(r)) protein	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009851 all species →	Domain	Modifier of rudimentary, Modr	Interproscan
IPR037202 all species →	Homologous_superfamily	ESCRT assembly domain	Interproscan
IPR029012 all species →	Homologous_superfamily	Helix hairpin bin domain superfamily	Interproscan
IPR016135 all species →	Homologous_superfamily	Ubiquitin-conjugating enzyme/RWD-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13678 all species →	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 37	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000813 all species →	Cellular Component	ESCRT I complex	Interproscan
GO:0006612 all species →	Biological Process	protein targeting to membrane	Interproscan
GO:0006623 all species →	Biological Process	protein targeting to vacuole	Interproscan
GO:0043162 all species →	Biological Process	ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12185	VPS37; ESCRT-I complex subunit VPS37	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.