Gene detail

Detailed information of ENSAPQP00000026828.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: CAB4007173.1, Hypothetical predicted protein [Paramuricea clavata]
Species Leptogorgia sarmentosa · all data for this species · gene families

Sequence

CDS

Transcript

ENSAPQT00000029955

ATGGCACAAATGCCGTTTGCTAAAATAAGATAATTACGACAGTCAAAATAATGACACCCATCTACGATTTAAGAGCTGTAGTATACGATAACCATCTGTCTGGGCCTCTTATGGTTTTGCCCACTGGTGACTTGGCATAAATTGCGCAACTTTCCCGCCAAAAACTACTTGGTCAAGTTTGGTTTAATTTGACTGGTCAAGATGGCGGATTTACCACCATGTAAATATGGAAAGAAATGTTATAGAAAGAATGCTGCCCACTTTAACAAGTTTTCGCATTTTGGCTATGAAAATAATCAGGATAAAGGAAATACAAGTGATGAACCTCCTACCAAAAAACTTCGAAAAGATGAGGACCAAGGAGAAACAACATCTAATTGTAATAAAGAAGAGGCAAAGGCACACAAAATTCCACATGAAATTATTCTAGAAATGTTTGGGATAAGAATGCCTGATGATTTCTATGATCTGTGGGAATTTTGCAAGGAGCAAAATGCCCAGTGCCCTCAAGATGCTTTAAAAGAGTTAAATCTTGAGTTAGTTGGTCCTTATGATATATTATCTGGTAAAAAATTCCAAGCAACTGAGAATTCTGGTTCGCTGTGTCTTCACTACAGATATTTTTGTGATCCTCCTGAGTTTGTTACAGTTTTGAAAGGTGACAGTACTGTGGGATTGCATATTGGTTATTATCGTGATAGTCCACAAGACAAACCAGTGTTAGTTGCCTCCAATGAAGCAAAGACAAGCTATGAATTCAAGGTGTTGGGTGATAACATTTTTGCTGGAGTGAGCAATAGTTTACACCATATTAGCAAACAGAAAGGACAGACAGAAGCACGAAAActcaaagaaaaaattgaaagaagaGCCAAAGAAAGGATGTTAAATTTACAAGCAAACCCTCCATCCATTAAAGCTAGAAATAAGAATGTGGTTTCGAAAACATTTCATAAAATGGGCATTGTTGTTCCTTTGGATGAAACTGGTGTTGGTTATCGAGATCTTCAAATATCAAATGCGGAACTGGAAAGAATGTTAACAGATATTGTAAATGACAACCAACGTGAAGTTTTTCTGGATGAATTGCAAGATATTATAACACGCATTCAATTTGCAAATGATGAATGTGACTATGGGATGGGTCTCGAGTTGGGCTTGGATTTATTTTCATTTGGACATGAAATGTTCAAAAGAAAGGCAACCATGTTACTTACACTGGCATATGAATTACTGGGTAGAAATGCATTTGGGAAAGTAGTTGAAGAACATCTAGAACAGCGTGATAAGAACACTCTTTATATAAACCTCATTGAAGGTGAATAAAACATCTGTCTCACTGTTCAAGGCAGCATTAAAACCCTTCTGTTATTGTAGCAAGTATTTTGTGCTACCCTGTTCACTGTTTTAAAGTATCTAAttaaatatatgtataatatacaatatatgaataaaagGATGAATGCCACTACAAGACTTAACATGCAATGCATGTGTTGTGAAGTTTATTCATATTGGAAGActattaaaatattctataTTTTTACTTAATTGTTTAAAATACAGTCTAGTGAAAAATACAATGTACACATTTTGTGTTACAAACTCAAGCTATTTAcagcaataaaaatataatatattaatctGGCATAGAGTAACTTCCTGGAGTATGAAAATCATTTTGGTTTCTGGTATGTGGGGATGTGGAATGTTACTGTAGACATGTTTGCACAAATTATTTATCAAAAGTCATGGCTGTGAACGTTGGTAAGCTGTGGAAAGAGGCGAACTCCATAAAAACTAATGAAGAATTTTGGTGTTACAGCCCAAATGTTTAAAGTTAACTTCACCTGTACATTCTTCATTATGCTCCATCGTACAGGTTCTCTCATCATGTGAAGATAACATCAAAGGGGTGAAATTAGCAACATTGCTGGCCTTTTCTACTGTATCAATTAGTCAGGCTTTAGGATTTGTGCCTTTGGTAGGAACTCTACTAGAAGTAcctaaaaatagaaaaa

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A7RS11	Histone PARylation factor 1 OS=Nematostella vectensis OX=45351 GN=HPF1 PE=1 SV=1
Q7SXS8	Histone PARylation factor 1 OS=Danio rerio OX=7955 GN=hpf1 PE=2 SV=2
Q9NWY4	Histone PARylation factor 1 OS=Homo sapiens OX=9606 GN=HPF1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006488 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10283 all species →	zf-CCHH	PBZ domain	Domain	Interproscan
PF10228 all species →	HPF1	Histone PARylation factor 1	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019406 all species →	Domain	Aprataxin and PNK-like factor, PBZ domain	Interproscan
IPR019361 all species →	Family	Histone PARylation factor 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13386 all species →	HISTONE PARYLATION FACTOR 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006974 all species →	Biological Process	DNA damage response	Interproscan
GO:0010835 all species →	Biological Process	regulation of protein ADP-ribosylation	Interproscan
GO:0042393 all species →	Molecular Function	histone binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0072572 all species →	Molecular Function	poly-ADP-D-ribose binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K26250	HPF1; histone PARylation factor 1	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.