Gene detail

Detailed information of ENSAPQP00000027221.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: XP_028409160.1, glutamate-rich WD repeat-containing protein 1-like [Dendronephthya gigantea]
Species Leptogorgia sarmentosa · all data for this species · gene families

Sequence

CDS

Transcript

ENSAPQT00000030431

TTTCCAATGACAATGTTTCTGGCAGCTGGTACGCAGTCTGCAAgtggaaaacaaaatttcttgATTGTCATGAAAATGTCTGATCTGCAAGAAATGGAGGAAGAACATAGTAATATCATAATATGCCTTTTCATCCTGATTTAGTGTTTGCTCCCATTCCTGAACGTCAATTGGTTTCCACCTGGTCGGAAACTGGTAAAGTTCATATTTGGGATATTTCCCAGCAACTGATTCAAGCTAACAATGAAAGCTCTATGATGAAAGCACATTCAGATCCCAAGCCTTTGTATACATTCTCAGGGCATCAGACAGAAGGATTTGCAATGGATTGGTCAAGAACCGTTCCTGGCAGGTTACTTACTGGAGATTGTaacaaaaacattcatttgTGGAATCCCACCTCAGATGGATCATGGCATGTTGATCAAAGACCATATTCCTCTCATGCACAGTCTGTGGAAGATTTACAATGGAGTCCAAATGAAGCCACTGTTTTTGCGTCGTGTTCAGTTGACCAAAGTATCAAAGTGTGGGACATCAGAGCAGCCCCGTCTAAAGCATGTATGTTAACAGCGCATGCACACGATGCTGATGTGAATGTCATCTCTTGGAACAGaaatgaacCTCTGCTGGTTTCTGGTGGGGACGATGGCGCTCTCAAAGTTTGGGATTTGAGACAATTTCAAAATGGCGAACCAGTGGCGTTATTCAAGCACCATACACAGGCTATTACATCAGTAGAATGGTTGCCATCAGATAATTCTGTTTTTTCTGCGTCTGGTTCGGATAACCAGATCACCGTTTGGGATCTGGCAGTTGAGAAAGATGATCAAGTTGGGCAAGAAGAGAAACCCGTTGACGTGCCACCACAATTGCTGTTTATACATATGGGTCAAAAGGACATTAAAGAACTTCATTGGCATGCTCAGATTCCCGGCGTTCTCGTGAGTACGGCTGAGGATGGATTTAATGTCTTCAAAACGATAAGTGTTTGAACGTCAATCTGTGTCTAAGATTGTCCGAATTTATATTCTCCATTGAATATATTGCGATATACCACGTCATTGTACGTCATCCCTTAGACGGCCTTTTTTGTTTGAACCTTGGGCAATTGATATGTTTTGACGTGTACTGCGTGACTGATGTAAATCCTGCGACTATATCTATGTTGAGAAATGTCAAATGTAAACACTCATTGCAAACTCTCTAAGCTGCGAAATATTTCACACTTGCGTAAGAGGTCGATAAATATTTATCCACTAACTTACAGTAGTTCTGCCCACTCGGATTGTGTTGTGAAAATTTAATCACAGCTTTGAGCTCTAATATATAAAatcaatacaatatatttgaaaatgaatagGCAATAAATTTTAAGTAGTGTTGTTTaggtattttattattgaCAGAGAAGCGGTCAATCCTGATTTGTATAAATGCATGCATACGATCGCAACTTAGAACTCATAGAGCTACCCCTGGTGATGGGTAAATCAGTCCATTCTAAGACGACGGAATCTAAATGTGTAAACTTAAAAAAAGGGGGCTCTACGTAAACCAACTTTTCCAGAAAAAACGTATcgataattttgttttgcaatgCATCCAGATAGATTGATATCCATCCTCGAACAGCTGTAAAAAATTGCCGTTTCATGCAATTATTTTTTGGGATAAATTTTCACTTGAGAGATTAGCATGCAATGCGTGAAAATCAATTACACAACAAATATTACTTCTATCTATACCACTGGGAATATATATTGGCTTTTAGCTACGTCATGATAAAATAGGTATATTGATAGCGAAGAAGACGGTAGATCAGTCCTTATCTAGCAAAGTAGTATTTCGTCTATTTTTATCATGCAGTCCTTATCTAGCAAAGTAGTATTTCGGTccatttttaatatatattggCGGGGATTTAAAGGCACTTTTACAGATAAAGTGATAAGAGAATTTATATTGCTTAAACTgatcaaataaaaattaaa

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q1JQD2	Glutamate-rich WD repeat-containing protein 1 OS=Bos taurus OX=9913 GN=GRWD1 PE=2 SV=1
Q9BQ67	Glutamate-rich WD repeat-containing protein 1 OS=Homo sapiens OX=9606 GN=GRWD1 PE=1 SV=1
Q810D6	Glutamate-rich WD repeat-containing protein 1 OS=Mus musculus OX=10090 GN=Grwd1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004805 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR051972 all species →	Family	Glutamate-rich WD repeat-containing	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45903 all species →	GLUTAMATE-RICH WD REPEAT-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0042254 all species →	Biological Process	ribosome biogenesis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10752	RBBP4, HAT2, CAF1, MIS16; histone-binding protein RBBP4	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.