Gene detail

Detailed information of ENSAPQP00000027226.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: CAB4001913.1, WD repeat-containing 82 [Paramuricea clavata]
Species Leptogorgia sarmentosa · all data for this species · gene families

Sequence

CDS

Transcript

ENSAPQT00000030438

AAGCCTGTCTGGTGAGGTCAACTGTGTTTTCCTTAACATGTGAAGCTGAATACTCTTTTTTTCGCCGCTTTTCCCTTCTTCTTTCTAAACATTTAGTGTTTCCTTTTTGAGAATATTGGTTGGTTTCAGTTAAAGTGACTTTTGGCGGCAAAGGACGTCTTAAAAGAACAGTTGACTGGATAGAGTCACTTGTTTTGACCGCCATGTTGTTTACATCGTGTTTCCATGGTGATCGGCAGACTGGAGTACTTTGAAAAATGCAACATGAAGTATAACACCATTTGAAaagaagaggcaaaatgaagTTGGAAGATCAGGTTATTCGTTCTTTTCGCGTGGCGAAAGTTTTTAGGGAAAACAGTGATCGTGTCAATCACTTGGACTTCTCTGCTAATGGTGAAACATTAATTACAAGTAGTGATGATGATTCTATGGTTATATATGATTGTATGGAAGGAAAACCACGGCGTACATTATACAGCAAAAAGTATGGTGTTGCCCTCATTCAATATACACATGCAGCGAACACTGTGATCCACGCTTCAACGAAAGTAGATGaTACAATCCGTTATTTATCTCTCCATGACAACAAATTTTTGAGATACTTTCAAGGACACACAAAAAGaGTTGTGACATTGAGCATGTCCCCTTTAGACGATTCATTTATATCTGGATCTCTGGACAAAACCTTACGATTATGGGATTTGCGCTCTCATAACTGTCAGGGTTTAATGCAAGTCAATGGCAGGCCTGTAGCAGCATTTGATCCAGAAGGTCTAGTTTTCTCAGCTGGCGTTGATAGTGAGATGATAAAGCTGTACGATCTTAGGTCTTTTGACAAGGGTCCATTTTCTACTTTCCACATCCAAGGAAATATGTCGGGAACAGAGTGGACTAATTTGAAATTTAGCAACGACGGTAAAATGATATTACTGTCAACTAATGCTGGAGCTATTTATCTTATTGATGCTTTTCAAGGCTCACAGCTACACACGTTTACAGGAATTGGAAGCTCTCCATCGTCGTATATTGAGGCATGTTTTTCACCCGATTCTCAGTATGTGATATCAGGGTCAAAAGATGGCCGTATACATGTATGGGCTGCTGATAGTGGACAAAAAGTTGCAGTTTTAGATGGAAACCATCCTGGTCCAACACACTGTGTCAAGTTCAATCCAAAGTTTATGACGATGACAACTGCTTGTACAAATGTCGCATTTTGGTTGCCAAACGTGGAGGAGGGTGAAGGGTCAAAGAAATCGTGACAAAGATGTTAAAGCGTTATATATTGTAGCGCAACATTTTATTGTGAAATTACTAAAGTGTATTTATAGGATTTTTTGGTGTAAGTAactgaatattttacaaactgTCAAATGACATGTACGTACTATTCCTAAATTGATAGCATATTAATTTACAGACTCTATGCCACATTACAAAGTGTGGTgaaataacaaacattttctgtagattaaacattattatataattttgttttattattatgtaCATTCTGTAAATGTTGTGACCATGTTACCCATTTTTCGGGTTACAGTCCGACAGTTTTGTCGAGAACCAGTATCTATAACAAAGAATGAATAATTGAACATGTTAGTTGTCCACAATATTATAATGCACTTTCAATTAGGACAAGTTTTTGCCTAGGGAGTTGGTTTCAGCTGATTTGTATTCATAGTAGGAATGCATATGCATATCATAAACATCTGCAAGCATTTTAATTTCTAATTATTAGAAACAATTTATTCTTAGAAAAATTATTGGCCAGTTGTCCATAATGATATTTGTTTGCCTTGGGCAAGTTTTGAACACCGCTGTGAAGATCACATGCACCCAAAATGGCAATTACCATTCAGATTGACTGTATTGTACATTAAACAAATACATCTTCACAATTTTTTGGTAAATACAGTATACTTCTACATACTTGATGATTCTCTGTACATTTGTCTTGTGTTCATGTTATCTCCATGATTATTTCTGTGATGACCAAAGAATGAGTCCCCAAAATCTCCAAAGTCATCAAAGCCATCACCAAAACCACCACTGAACACGCTGTCCTCTTCCTCATAATAGTCATCTTCATcatccattttaaaaaagtcatcAAAACCTCCACCGAAAGATGATGAAAACTTAAAACCATTACCACCACGTTTGTTTCCATTACCTCGCCCAAATCCACCAGAGTCAAAACCTTTGAAAAAGTCATCAAAACCTCCACCGAAAGATGATGAAAACTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5ZMV7	WD repeat-containing protein 82 OS=Gallus gallus OX=9031 GN=WDR82 PE=2 SV=1
Q6NV31	WD repeat-containing protein 82 OS=Danio rerio OX=7955 GN=wdr82 PE=2 SV=1
Q6GL39	WD repeat-containing protein 82 OS=Xenopus tropicalis OX=8364 GN=wdr82 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007583 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR037867 all species →	Family	COMPASS component Swd2/WDR82	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19861 all species →	WD40 REPEAT PROTEIN SWD2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0048188 all species →	Cellular Component	Set1C/COMPASS complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14962	WDR82, SWD2, CPS35; COMPASS component SWD2	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.