Gene detail

Detailed information of ENSAPQP00000027358.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: CAB3993239.1, collagen alpha-1(I) chain-like [Paramuricea clavata]
Species Leptogorgia sarmentosa · all data for this species · gene families

Sequence

CDS

ENSAPQT00000030589

ATGTTTAAAGAGACGAACACAAGTATAAACGGGTTACCTGTCTTTGGGGAAGCCGGCCTTTGGAGAGATGGACTTACAAATGAGGGGAAAATTCGTCATTTTGTGAGTCCTAGTCAAATTCAAATGAAAAGTCCGAAAGACCTTCCCTGGAGCGCTTTTAAAGTTTATGACAGGGTTTTAGAAAAGAACCGCTATGTTCCGCGCAAATGGACACAAGAAGAGTTCGAGGCTGCTTTACCTGAGCGATTTAAACGCAAAACAGCAGTGAcggtttttcaaaacgaagCCGACATTGATGAATTCGACACACACAAggaaaatgcaatatatataccgaatgaaaatacacACCAACCGCGCAATTGTCCAGATCTTCAAAAGAAAACCGAAATcaaagaaaagataaaatatCTTCAGGCCATTTTTGCGGAGACTGGTAATTCAAATCCCGATTGTGAGTCAAACAACGCCGTGTATACGGGATTGAAAGCTTCTGCAAGAGGTGAAACGCATGAAAAAGAGCAAGAGGAACTAGAAAGATGCAAAGATAGCGAAGCGAAAGTAAAGTTAATTGACGGAGATTTGATTAAAAACTGCCGCGAAGACACGGTTAATGATGAAAACACAGAAATATTACACGATGTTCTGCGAAAAACAGACATTCCTTGCAGtacattttcttctttcttggATGCTCTCGTGCGATGTCTTTTGAACATTAAACCGTTTGAAGAACTATTGTCAAACCTATCCAAAAGTAGCCCCATTATAGACATGCTGAAACCACTCATGCAGTTAACTGGTGATCCGGGGCAATTAGTCTCTCAAAAGTTAGTTTCCGCATTTTGGGAGAAAATCTCGGACTTTCACAACCATGACGAAATGTTGGTAATGGTGTTAGCAGTTCTTCATGACGAAATAGCACAAGCTGCCGAGAAAAATGAGGACGACCTCCGTTCGTTAATCCAAGGAAAGTTTTGCCACATTCAATCGTGCGATTGCTGTACATCGATTGCGAAAGATTTCGAACCGTTTTTGTTTCTTAACCCAACAACACCACCCACATATCCACAAAATAACAGCATAGTGGATGTGAACTTTTTATCGTGCAGTTCCGAAGGTGTTTGGTATATCACAACACGGCAATTTGTTATTACACATGGAATGACTGTAGCTCACCTTGTTGACGAGTTGCTAACCTGTCCCGAATTCAATGCTTGTGAATCCAGTTCTATACGTATTGGAAAAGTTAGTGGCGGTCGAATTGTACAGACACTCGATAACAATGTTAAGCTATCCACAATAAAGTTCACGTCAGATATATTCGCGTTTAATGTCTTACGCTTCAACTGTGTGCTTGCAGAAGATACAAATGCGTTGAGCAGTACAGCTATATCCTATCAGCTGTATTTCAACTGTGGGTTATGCCTTAGTGGTGGCAAGGAAGTCGGCTTGTTCATTCACAAGAATTGCGGCGGAATGATTTGTCGCGATTGCTTGAATGTAATCACACAATCCTATCAAGATTGGGAGCTCTGCCCATGTCCAAATTGTGAGCAACCTATAGACATCGACAAAGAGCTATCTAGAGCTAGAACGAATAGAGATATACCGAAGGAACTAAATCCTGGATCCACAGAAGACAATTGCTGGTGTGAGGTTATGTTTCGGTTGCAACCCTCTTTATGTTTAAGTTGTACCTCTCAAACCTCGTTCACCTTGCACACTGTGGACAATACTGGTCACGGATGCTCCGTCTGTTCTCTGGATCTGTGTAGCGGTTGTCTCGTCCGCATTGATGACAACATCAGAATTACAAGAGACACAAACCTGGCTGTGCATTTCGACGACTTGGCAGAGGAGTCGAAGAAAAACTTTGGAATTCCTAATCCCCTTGGAATTATAACTTCAAATTCGCAAGGTTTATTTGACGAGATTCTACAATCTTGCGTCCGAGCATCAATTACTGAAAAGAATGTTTGCTCGGAGTGCTGTAATCCCTGTAAAGTATCATCATCAATAGCAGAGTTTCCAGAGCTCCTTATTATTCATTTGAATCATCTGTACGCAGATCAAGGCCTAGCACCAGACACCACCGTCGCCGATGTATCCAGGTTTCTTGTACTACAACATGGAAATGTATCGACTCAAGGAACGACGGAGAACCTAACCTACCAGTTAACGGCTGTTGTTCTCGCGGACGAAAGTAGTATAGCTCCATCATACAAGGCATTTGTCACAGAAATTACAAACGACTCTTGGATATTATACGAAGAATCCTACATGGTGGAAACCAACCCGTATCAAGTGCACGTCACAAAAAATAGTGTCCTTCTGTATCAACCAGTGAAAAACGCAGATTTTTCCGAAACAGGACATGTTCTTcaaatgcccttgctcgaggAAAGAGAACACGCCTGCAAAGTCAGCAAAGACCATTATTTTGGAAATGGCGTCTGCAGAAATATATCTGAAGAAATGGGATCCGCTCCTGTGGATTTCAATAGAGCTGCTACGGAACAAGCTTTGCGTTCAAACGTTTATGACAGACAACTTGAACCGGGTGAATACGTGAGAATGCATCCTTCATGTTTACCCGATCCCCGTTTGTCTGTCGATTTTGATGGCATCAGTCCAATTTCTGCGCAAGAGATATGCAACAATGACTTGAAGTTGATGCGCGAAACAAAGAAGTTAATCCGGGCAGTGAAACAGGAGGATGCATACGGAATTGTGTGCGCTTTAAAGCGAGGAGCAAATCCGTGTTTGTTGATAAATGATGTCTCAACGCTACATTTGGCTGCTGGTCTCAAGTCCGATCAACGATGCTCGATAGTTTCGTATCTGCTGAAGTACGCGAATGATGTGAATATTGCCACTACAGACGGAACCACGCCCTTGCACGTGGCAGCCGCATGGGGTCATCAAGATGCTTTGGAATTGCTGCTAACCCATGGGGGAGATGCCTTCGAGTTGACGGACCAAGAAGGCAACAGTGCATTTGATCTCGCTACCAAGAACTGCTCCAGTTTTCTTCAGCTTTTTAATCAAAGCAACAGAAACTCCCCTGGGTCTTTCGAACCCTCGACAAGCTCTAGAACTTCGCTTACCAACCAGAAACCCAAACGACTCGAAGATATAATCCGTTCCAATGTGACCCTTCCATCATTCGTGAACGAAGAGAATACGAATCGTTGTCACTCCCGTCATCGTTGGCGTAAAAGGTTTCAGAGTTTCAGGAACAAGTCTTCGGGAGTTTTCAGACGTCTTAGACGAATTAGCAGCATTCGAAAGCGATCTCGAATTGGAGTGATGGTTGAAGAGGatgaatattaa

Transcript

ENSAPQT00000030589

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0021425 (this species only)
Ubiquitin family	DUB\|USP\|USP · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF00443 all species →	UCH	Ubiquitin carboxyl-terminal hydrolase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR028889 all species →	Domain	Ubiquitin specific protease domain	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR034998 all species →	Family	Ankyrin repeat and LEM domain-containing protein 1	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR001394 all species →	Domain	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46427 all species →	ANKYRIN REPEAT AND LEM DOMAIN-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000712 all species →	Biological Process	resolution of meiotic recombination intermediates	Interproscan
GO:0000724 all species →	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0004519 all species →	Molecular Function	endonuclease activity	Interproscan
GO:0004520 all species →	Molecular Function	DNA endonuclease activity	Interproscan
GO:0005654 all species →	Cellular Component	nucleoplasm	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0004843 all species →	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0016579 all species →	Biological Process	protein deubiquitination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSAPQP00000027358.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.