Gene detail

Detailed information of ENSAPQP00000027415.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: CAB3977683.1, prolactin regulatory element-binding -like [Paramuricea clavata]
Species Leptogorgia sarmentosa · all data for this species · gene families

Sequence

CDS

Transcript

ENSAPQT00000030655

TCAAATCGTAGTTGTGATTAGTTTTAATCCATTAATCCctgattaaaaataatatcttAAATCTAGTCGACAGCATTACTTATTGCCAGCGGTTTCTCCACAAAAAGAACACATCTGCAACATCTGCCACGTTTTCCACTTTGTTTACAACTTTTGTTTACAACTATTATTTTAAGAATGAGCGCTGTAACTTTGCACACGACAAACTTTCCTTTATACACTGTCAATGTATTGGATAAAAATCATTTTGTTGTGGCAGGAGGTGGTGGCTCAGCGAAAACTGGAGTCCCAAACGCTTTGCAAGTCTTTGAACTTGAGTACAATGACAAAGAAATAAAGGCGAAGAAAGTGCACGAACATGATTCAGAAAGAAAAGCCATCATGAATTGTGCTGTTCATCCAAAGGAAAAGTCACTTGCAGTTGGTAAAGAGAATGAATGTCATTTGTTGTCAATGGACATCGATAAAAAACCCCCATCAAAAACTGGtaaaaaaggcaaaaaaaGCCAAAAAGACGAGAAACCTGGAGGAGAATATAAAGTGTCAACACTCTGCTCTGAAGTGACTGTGAAGTgtgatgatgaaaatgatgatgGCGATTTTCAGAAGGTAGTTAGATTTACAAGCAGTGGTGAGCATATTGTTACTGGAGGTTCCAATGGACATGTCTGTATACTAAAGTATCCAACATTAGAGTGTCTTCACAATTTCAAAGCTCATGATACAGATGTGGACGATCTTGATATACATCCAAATGGGAAAAAAtTCGTGACTGTGTCGAGAGATACAAAGGCCTATGTTTGGAAATTGGAAGAGGGAAAGCGagaatttgaattattttacaCAGGACCAAATGGTGATGAAAGTGAAGATGCATTCAGAATAAGGGCGTGCAGATTTTTGACGAGTGAAAAGGGCGAAGTATTCTTGTATACAATTCAAGTCCCGGCGAAATTTGATCGACATAAACCATTACCGTCGCTCATTGTCAAGTGGGATTGTTCAAAATGGATTCCAAAGCTCAGCCGCACCGCTGGACTTGAACCACTTACACAAATGGCCGTTAGTGATGACGGCCAGTATTTGGGTGTTGGCACTGCTTCTGGGTCTATTGCTGTTTATATTGCCTGGAACTTAGCACCTCTAGTTTCAATCCCAGAAGTTCACAATATATTCGTGACTGGCCTGGCTTTTCTGCCGCCCTCAGAATCACTGGAGCAAGCTAACAAAGAATTTGGATTGCTCACAATCTCCGCCGACAATACGTGCAGGCTCGTTACCTTACCAAACAGAAGAGAGTTCAGTATTTGGTGGTTGTTGATTGGATCGATACTGCTGCTTTATTTCACTTTTCTAGCTCTGAGTTATTTCGGGATTGATCTGTAACGACTATGTCGTTATAGGAGGTGTCAGAGCATCTGCGAAGGATTTAGGGAATGCAAACATGGAGGTTATCAGCGTGCAGATAATCTCCATATGCAGCTAATTCGAAAAAGATTGTGTTTTGTAAACTTTAAACTCTAAAGATTCAAGTCAACACTAAGCTACAAGCGTACAAAGGATAATAGGGGCGTCGATTAATCCGTTTAGAAATCATATATGAGGGTTTAGATTTTAAGGTTCGCAAACCAAATTATTCGTAATCAGTTAGCTATATATCTTGAAAAAGAACTTCAGTCGTGACTGCCAAATTGAGGTTGTACTTAGTTCTTAACAGATTCTAAATCTCAGGGGAGGGGCATTAAATTAGTATAGAGAAGATATTactaattataaatattacacGCTGTTATTCAATAAAGTGACCTTAAACTATCTCAGTTGAATAAACAATTAAGTGaattaacaacaacaacaacaatgttaaaaccaacaacaacaaaatgaacaacaatgttgggatgttgaaaaaaacgaagaaaaaataaaaacgaattttgcgcatgcgcaatgaaatttcacaatacgagtcccacaacaaccgcTATGGTATAACGGCTTCTCCCTTCTTgttgatttcaaattttccctccaccattcaaaatgaattcG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9WUQ2	Guanine nucleotide-exchange factor SEC12 OS=Mus musculus OX=10090 GN=Preb PE=1 SV=1
Q9WTV0	Guanine nucleotide-exchange factor SEC12 OS=Rattus norvegicus OX=10116 GN=Preb PE=1 SV=2
Q9HCU5	Guanine nucleotide-exchange factor SEC12 OS=Homo sapiens OX=9606 GN=PREB PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006227 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR045260 all species →	Family	Guanine nucleotide-exchange factor Sec12-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23284 all species →	PROLACTIN REGULATORY ELEMENT BINDING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003400 all species →	Biological Process	regulation of COPII vesicle coating	Interproscan
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0009306 all species →	Biological Process	protein secretion	Interproscan
GO:0030176 all species →	Cellular Component	obsolete integral component of endoplasmic reticulum membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14003	PREB, SEC12; prolactin regulatory element-binding protein	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.