Gene detail

Detailed information of ENSAPQP00000027439.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: CAB4042822.1, toll-like receptor 13, partial [Paramuricea clavata]
Species Leptogorgia sarmentosa · all data for this species · gene families

Sequence

CDS

Transcript

ENSAPQT00000030684

TGTGTATTTTAACAGGGAATATTTCACATTCGTCATTGTCATCAAAGCAATCGCGTGGGCGCTCGGACAGAGGATCAACAGCTTAGAAAGACTTCTTTGCATCCGCTACCACCATCCCAATATCGCCGGAAGTGTTTATTTTGTCAGTTTCTATATACAACAGCAACTACATGAACACGTTAAAGCGCGTTTCATAATACTAATTTTCTCTGAAGTTTGCAGTAAACCATCGAATACTCACTGAGGAGTTACAACTAATATTCAATATTTCTGGAGGTGTAAAAGTCTCAAAGAATGTCATGATATTTCCATCAATATATGTTTTCATCTTGTTTTCAATTCCAACTTTGTATGCGGAGGAAGACTACGACGACTACGACTCGGACTACGAAATTTGTGATTTCGAGTACATCCGCAATTGCTCTAGTTATACAACCGGCCGTACTAATTTAACAGAACAAAGTGTTTCACTGGGCCTCGACGATGCGACGGAACCAGAATATGAAGTTGACGGCGGAAAGGAGTTCCTTCTCGACTGTTGTTTTTATTCTAAACCATACTGCCCAAATATAACATGGTATAAAGATGGCAAGGAAATAAAGGGTAATGAACTTACAATACGCAAAATGAATGGTGGATGGACACTGAAGATTTTTGCGACAGCAGAATCTGGAGGGGATTACAGGTGTACTGCGACGACACCTTATGGTGAATCGTTAAGCCACCCtatccatgtcagtgttttcgCACCTTGTTCTGGAAACTATACCGTCATCACAACACCTCGTCAGGGTGTAATAAAAGTTCCAAAAGGAAGTCAACAAAAGCTTGTGtggaattttatttgttttggaAAATTGCATACAGCCGCAGTCACATGCAAAAGAAATAACAGCATAGAAATAACAGAAAACGACTACTACAATATAACTACACTTCGATCAGATAAACCTAATAATCGTGCCCCCCTTATACACACCATAACTATTTTGAACGTTTCAAGGAGTGAGAATATTACGTGCAAAACAGACGATGTTTATTCGCCAACATCGACTATTGTTTTGGTGATGGAAGAACAAGAAGCGCTCATCGCCCCGCAAACTGACTTTTTCAAAGAGAAAGGAGTGTGGATGGTGATTGGAATCTCTTTATTGCTGAGTTTTGTTGTAGTTTTTGTTCTCAGTTTATGGTATAGAAGAAAAGTGAGACAAAAgacgaaaatattttacaatcatAGAGAAAAAGAGGTGGCAGTTCGCTACGACGCATTCATCTCGTACAGCGAAGTTGACGGTGGTTTATTTGTGCGTTCAACATTGAAGCCGATGTTGGAAGACGAGTGCGGATACACGTTATCCTTACATTATCGTGAATTTTCTCCTGGGGCAGCTATAGTAGATAACATCATCCAGTGTGTATATGACAGTCGTCGCATCGTGGTCGTTGTTACTCCAAAGTTCCTTAAAAGTGAATGGTGCAAATTCGAGGTGAACCAAGGACTCCGTCGCGCTGTCAAAAAGCCGAACACTCTTATTGTCATTATGCTAAATGAAATGCCGTTAGATGTATTGCCAAAATCACTTCGGGCATTCTTATCAGATGTCACTTTTCTTCTGTGGGACGATGGAAAACGAGATGAAATGTGCAAAAAAATGAAGAGAGCATTAGGAACACCGTTCACTGTTAATAACGTTGAgggacaaaatgaaaatgaggTTGGGGTTGAAATTTCTACTGAAGAACCGGGCAACGGAATGGCGTTATCTATGAAGAGTTCGTCAGACAATGGAGCCGTTAATGCAGTGTAGTGTCGTCAGTATGTTGTCAATACATCAAAACCTTCATGGTCGTTTTGGGTATTAAAGATGCCGGATTCCGGAATTGACGTCATTTAAGCCAACTGAAATGAGATTTTCGTTTCAAGGCACAAAAATGGCTTAAATGACAGCAACTGCGAGAATTCCATGAAAGCAAAGATTGTCTCtaagaaaatatattgcgTTTCGTCGTACAAATTTCTTCACGATCTGAAATGgaacaatgttttttaaagaaaagtaGGCCTAGCTACAATATATGACTATCAGACAAGATACGACTATCAGAAATGGGACCAAGGGCTCGAATTTTTACGTCAATAATGTTATAATGAATACCAGAATTAAAATTACTACCAACAGGTACTAATTTGTTATCATCGCGTTGGCAGAACCTGGTTCTTATCTGTTTAGGAAATGAAGTAAATGGGATGAGTGCATGGTACTGCACGCGAAATTGCACTTGATATCATGCAAGAAAACTCGGGTACTGAAATGACAGTAGAGgaatgtataatatatatacagtatatatataggtgACGACGAAGGACCGTTGCTCCCAACAACGAATCTTAGCCACTGAATCAGTGGTCGGGGATatttcaaaactcaaaagTATAGGCATAAATAGAACACTTTTATTTTAACATAGTAAAGATATTTattgtcttttgtttttacacatgattataaattttgataaaactaCAAAAGCACAGGCCATCTTGGCCTAGTTGTCGAATTTTTCATGTATTGAACCCATAGTTATAGTATGGTAATGAACACTATACGTTCTTCTAGGTTGGGCACAGAAAAAGTTTGTCGTCTGCCTCTAACCCTTACTAGTTAATTAATCTAGTTCGTTCAACTGTATGAAAAAACGTTAGTAATTCATTcttaagccggttttccacttgcgaattttgtcgcgcgaagcggACTTTTGCTTGCCGAAATAGTTCGCGCGAATGACTCTTCTCTTTCTTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Y2C9	Toll-like receptor 6 OS=Homo sapiens OX=9606 GN=TLR6 PE=1 SV=2
Q15399	Toll-like receptor 1 OS=Homo sapiens OX=9606 GN=TLR1 PE=1 SV=3
Q704V6	Toll-like receptor 6 OS=Bos taurus OX=9913 GN=TLR6 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000113 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01582 all species →	TIR	TIR domain	Family	Interproscan
PF13895 all species →	Ig_2	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035897 all species →	Homologous_superfamily	Toll/interleukin-1 receptor homology (TIR) domain superfamily	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR000157 all species →	Domain	Toll/interleukin-1 receptor homology (TIR) domain	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR017241 all species →	Family	Toll-like receptor	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24365 all species →	TOLL-LIKE RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0002224 all species →	Biological Process	toll-like receptor signaling pathway	Interproscan
GO:0004888 all species →	Molecular Function	transmembrane signaling receptor activity	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006954 all species →	Biological Process	inflammatory response	Interproscan
GO:0006955 all species →	Biological Process	immune response	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0038023 all species →	Molecular Function	signaling receptor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSAPQP00000027439.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.