Detailed information of ENSAPQP00000028369.1 in Leptogorgia sarmentosa

Genomic Location: chr5:4885353...4886147
NR annotation: CAB4015515.1, Hypothetical predicted protein [Paramuricea clavata]
Species Leptogorgia sarmentosa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q08DP2BLOC-1-related complex subunit 5 OS=Bos taurus OX=9913 GN=BORCS5 PE=2 SV=1
Q969J3BLOC-1-related complex subunit 5 OS=Homo sapiens OX=9606 GN=BORCS5 PE=1 SV=1
Q9D920BLOC-1-related complex subunit 5 OS=Mus musculus OX=10090 GN=Borcs5 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0009276 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF10158
all species →
LOH1CR12Tumour suppressor proteinFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR018780
all species →
FamilyBLOC-1-related complex subunit 5Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR31634
all species →
BLOC-1-RELATED COMPLEX SUBUNIT 5Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0030672
all species →
Cellular Componentsynaptic vesicle membraneInterproscan
GO:0031224
all species →
Cellular Componentobsolete intrinsic component of membraneInterproscan
GO:0032418
all species →
Biological Processlysosome localizationInterproscan
GO:0072384
all species →
Biological Processorganelle transport along microtubuleInterproscan
GO:0098574
all species →
Cellular Componentcytoplasmic side of lysosomal membraneInterproscan
GO:0099078
all species →
Cellular ComponentBORC complexInterproscan
GO:1903744
all species →
Biological Processpositive regulation of anterograde synaptic vesicle transportInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K20819BORCS5, LOH12CR1; BLOC-1 related complex subunit 5-Membrane traffickingko04131deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Leptogorgia sarmentosa tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Leptogorgia sarmentosa, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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