Gene detail

Detailed information of ENSAPQP00000028529.1 in Leptogorgia sarmentosa

Genomic Location: :...
NR annotation: CAB3992403.1, Counting factor associated D [Paramuricea clavata]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSAPQT00000031931

ATGAGTTTGGCAACGATGCGGTTTTGTTATCAGATAATAATAATCTTTACTTTGTGTTTGACTGTAACGCTGATAGCTTTAAGTTACGAGAAGTGCgagaatgttttaaaaagagcATCCATTTACCTGCCATTACCATGGGCTTTTCAACGTGGGATAAAATCAAACTTATCACCGAGATTCAACAAAGCTCCGAGAAGTTTGAGTGATCTCGAGTTTTATCCTTCGTATCATGTAAGAGGATTCCTACGATTGGTAACAAGCAATTTGAACGAACCAATAGAAGTGTGGTACAACAAAGAACATAAACAAAGCAGGATCGACTATTACGACGGTGATGTGAAAACCTATCAGGATGGTAACCTCAGTTTGTTTATAAAGATCATCCCAAAATATGACtcgataaaaaacattcaCACGATTGGCTGTTGGAAGAAGCGAAAAAAACAAGGTGGAAGAATCGgggcacaaaatattttaccaacGTCATGGTCCTGGCCTTTCAAAGGGAGCTTAGAAGATTTCAAGTATATTGGCGATGACATAGTAGATGGTAGGCTGTGTATGAAATGGCGGTACGAACACAACATGATGGGTCGAAATAACGTTTATACGTACTGGGTGGAGAAACGTCATCCACCCGCACCAGTCCGCTATGAAATGATTGGATATGATACTCTGTTGACGTCATACtatgataaatatatcattgATTACTCCAGCTACGAGGAATGGGAATATGAAAAAGATGTATTTGATATACCAGAAATTCCTGGAGACAGCGGTTGTTGGAACGCATCACAGGAGCAGAATGAAGAAGGAGAATACTTCATGAATCCAATTGCTGAGTTTATCTCACCACATGATAGAGACGAGCCAATAGAGAATAAATTCCATCAATACAGGACGATCCATGGGAAGGATTACAACGATACAGAACATTTGGAAAGGAAACATATCTTCAGACATAACACAAGATTCATTGATTCAGTAAATCGGAAAAACCTTACCTTTAAGCTGAAGCCTAACTCATTTACCGACATGACTGAGTCAGAGTACAACTTACACAAAGGACACTTGCCCGATCATCCAATGGAAATAAAACCACCagagaaaaaacgaagaaagaaattatatatCAGTGAAAGATACAAACCACATAGAAAGGCGCCAAGGATTCCTGACGAGCTGGACTGGAGGAAATATGGTGCCGTATCCAAACCTAGAGGACAGAGTACATGTGGTTCCTGTTGGGCTTTTGCGGCTATTGGAGCCATCGAAGGCGCCAACTTCATAAAGACAGGGAAACTGGTTCAACTTTCTGAACAGCAAATGGTTGACTGCACATGGAAAGTGAAAGGAGTTTGGAACGGTAGAGGTAACAATGGGTGTCATGGAGGCACGGCGTGGAAAGTGATGTTCTGGGGGAAAACTAATACCATAGCAACGAGCGAAAGCTACGGACCATACAGAGGACAGGAAGGATACTGTAAAACAGAAAACATAACGGCGGGAGCAAAGATTTACGGGTTCAGACGAGTAAAGAGACATAGTGCCCAGAGTCTGAGGCGGGCAATAGCATATCATGGACCAGCGTCTGTTGCCATTAACTCGCATTTGCTGACCCTGAAGTTTTACAGTCATGGTATACTAGACGACAAGGATTGTGGTAACGGTACAGATCATGCAGTGTTGGTAGTGGGCTACGGTAAGGAGAATGGAGTAAATTATTGGATAGTAAAAAATTCTTGGTCAACGTTGTGGGGAGATAAAGGGTACGTAAAAATAAAAGAAGACCTATGTGGTATATTAAATAAACCCGTTATTGTGCTGAATAGACATATAAAATCGTATCCATGGCATCGGAAGCGAAacgaaagaaaacattttagcAAATGGCATAAGAAATCGAAGAGGAAACGTAAATATAGAAAGATTAAAGGTAAGAAACGCTGGCATAAAAGGCATAAATGGAGAGGAAAAATATAG

Transcript

ENSAPQT00000031931

ACAATAACCACCTGTAAGTCAAACAAAATTCGATAGTAGTTCAACCTGTAAcagttatattatatatgcaaCGTGTTCATTACGAAGATATGTCCAGTCTGAAGCAAGATAAATTGCGAATAGTAAACTCTTGTATTAACATTATGGAAACGTagttagtataatttcattttttatgaaatcATTTTTTACCCATAACACTATTATGGCTTGGCTGGCACAACTGTAAATAATAACTAAGAACTTCACGGATATTGCCAGAGTATCAACAATTGTTGACTCTTTCTTGCGTTACAACCATGAGTTTGGCAACGATGCGGTTTTGTTATCAGATAATAATAATCTTTACTTTGTGTTTGACTGTAACGCTGATAGCTTTAAGTTACGAGAAGTGCgagaatgttttaaaaagagcATCCATTTACCTGCCATTACCATGGGCTTTTCAACGTGGGATAAAATCAAACTTATCACCGAGATTCAACAAAGCTCCGAGAAGTTTGAGTGATCTCGAGTTTTATCCTTCGTATCATGTAAGAGGATTCCTACGATTGGTAACAAGCAATTTGAACGAACCAATAGAAGTGTGGTACAACAAAGAACATAAACAAAGCAGGATCGACTATTACGACGGTGATGTGAAAACCTATCAGGATGGTAACCTCAGTTTGTTTATAAAGATCATCCCAAAATATGACtcgataaaaaacattcaCACGATTGGCTGTTGGAAGAAGCGAAAAAAACAAGGTGGAAGAATCGgggcacaaaatattttaccaacGTCATGGTCCTGGCCTTTCAAAGGGAGCTTAGAAGATTTCAAGTATATTGGCGATGACATAGTAGATGGTAGGCTGTGTATGAAATGGCGGTACGAACACAACATGATGGGTCGAAATAACGTTTATACGTACTGGGTGGAGAAACGTCATCCACCCGCACCAGTCCGCTATGAAATGATTGGATATGATACTCTGTTGACGTCATACtatgataaatatatcattgATTACTCCAGCTACGAGGAATGGGAATATGAAAAAGATGTATTTGATATACCAGAAATTCCTGGAGACAGCGGTTGTTGGAACGCATCACAGGAGCAGAATGAAGAAGGAGAATACTTCATGAATCCAATTGCTGAGTTTATCTCACCACATGATAGAGACGAGCCAATAGAGAATAAATTCCATCAATACAGGACGATCCATGGGAAGGATTACAACGATACAGAACATTTGGAAAGGAAACATATCTTCAGACATAACACAAGATTCATTGATTCAGTAAATCGGAAAAACCTTACCTTTAAGCTGAAGCCTAACTCATTTACCGACATGACTGAGTCAGAGTACAACTTACACAAAGGACACTTGCCCGATCATCCAATGGAAATAAAACCACCagagaaaaaacgaagaaagaaattatatatCAGTGAAAGATACAAACCACATAGAAAGGCGCCAAGGATTCCTGACGAGCTGGACTGGAGGAAATATGGTGCCGTATCCAAACCTAGAGGACAGAGTACATGTGGTTCCTGTTGGGCTTTTGCGGCTATTGGAGCCATCGAAGGCGCCAACTTCATAAAGACAGGGAAACTGGTTCAACTTTCTGAACAGCAAATGGTTGACTGCACATGGAAAGTGAAAGGAGTTTGGAACGGTAGAGGTAACAATGGGTGTCATGGAGGCACGGCGTGGAAAGTGATGTTCTGGGGGAAAACTAATACCATAGCAACGAGCGAAAGCTACGGACCATACAGAGGACAGGAAGGATACTGTAAAACAGAAAACATAACGGCGGGAGCAAAGATTTACGGGTTCAGACGAGTAAAGAGACATAGTGCCCAGAGTCTGAGGCGGGCAATAGCATATCATGGACCAGCGTCTGTTGCCATTAACTCGCATTTGCTGACCCTGAAGTTTTACAGTCATGGTATACTAGACGACAAGGATTGTGGTAACGGTACAGATCATGCAGTGTTGGTAGTGGGCTACGGTAAGGAGAATGGAGTAAATTATTGGATAGTAAAAAATTCTTGGTCAACGTTGTGGGGAGATAAAGGGTACGTAAAAATAAAAGAAGACCTATGTGGTATATTAAATAAACCCGTTATTGTGCTGAATAGACATATAAAATCGTATCCATGGCATCGGAAGCGAAacgaaagaaaacattttagcAAATGGCATAAGAAATCGAAGAGGAAACGTAAATATAGAAAGATTAAAGGTAAGAAACGCTGGCATAAAAGGCATAAATGGAGAGGAAAAATATAGAGGCATCATTAGCTGAAGTTAAAGACTATTGTTTTGACCAAAAGCCCCTTGCAAATTGTAAGGTGACTATCCTCAGCGGTATAAAACTACCTGAGGTAATACTTTCACTATAATTGGCCTCTTAAGTTCGTTCCCTAACTGAGACTTGTGTCAACAAAGCACGTTCACCAATCGTAGCTATTTCATGCAATTTACAACAATTAGCATCAAATCTTCAATTAACTGTAAAACATTATCTATGATCATAGATGTGTAATTCTACGTatgaaataatgaattttTACTATTAACTCACGAACTTGGCTATGAGTAGCCATCTAACTTTGACAACATAATGACCCAAACATTTCGTGAATAATACAACTTAAAAACATACATGCTACTTACAAGATTATTATTGTGTCGTATTGGGTTTAAATTCTTATAGCAACCCTATATTTACTTATACTTGGCAAAGTTTCAACATATACTAACACATATTAAATTAAGTAAAACGATAAATTTAACTTCAAATTAGTTATAGTTAATCATTTGTCTACACTGATGCTACAATAATGATCAGGATAAACATGCCAATACCACAGAATATTGAAGCATATGAAAGATTCCTTGCTGTTATTGCTGAAGCCATTGCCCTCTCGTAATTTCCTGCAGCGTAGTTGCTCCTTGCCTGATGAAAAAAGCTTTAATGAATTGTTGATTAAAAAATAGCAATTTCAAATGCATTATTTGTAACTCATACCTCAGAAGATTTAATGATGGCAATCactccaatgaaaaaacaacagaaaaggCAGGAAAATATTGACAATCCCATGTAATCGTTCATATAAGGAATAACTGTAGCGGTAACTGTTGGCTGTTGCTAAAATGATAGATGGTTTGGTGCAATAAATACTTTTCAGGATTTTCTATTCCGATTGGTTGACAAACCGTCTGTAAAAAcctatccggaccgtggtacGTATTTTCACATAATTATGCTCacagactcaattc

Protein

Uniprot

Uniprot term	Description
F4JNL3	Probable cysteine protease RDL6 OS=Arabidopsis thaliana OX=3702 GN=RDL6 PE=3 SV=1
Q9FMH8	Probable cysteine protease RD21B OS=Arabidopsis thaliana OX=3702 GN=RD21B PE=1 SV=1
Q94B08	Germination-specific cysteine protease 1 OS=Arabidopsis thaliana OX=3702 GN=GCP1 PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08246	Inhibitor_I29	Cathepsin propeptide inhibitor domain (I29)	Domain	Interproscan
PF00112	Peptidase_C1	Papain family cysteine protease	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR025661	Active_site	Cysteine peptidase, asparagine active site	Interproscan
IPR000169	Active_site	Cysteine peptidase, cysteine active site	Interproscan
IPR000668	Domain	Peptidase C1A, papain C-terminal	Interproscan
IPR025660	Active_site	Cysteine peptidase, histidine active site	Interproscan
IPR013201	Domain	Cathepsin propeptide inhibitor domain (I29)	Interproscan
IPR038765	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR039417	Domain	Papain-like cysteine endopeptidase	Interproscan
IPR013128	Family	Peptidase C1A	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12411	CYSTEINE PROTEASE FAMILY C1-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0008234	Molecular Function	cysteine-type peptidase activity	Interproscan
GO:0004197	Molecular Function	cysteine-type endopeptidase activity	Interproscan
GO:0005615	Cellular Component	extracellular space	Interproscan
GO:0005764	Cellular Component	lysosome	Interproscan
GO:0051603	Biological Process	proteolysis involved in protein catabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K05460	HGF; hepatocyte growth factor	-	Glycosaminoglycan binding proteins	ko00536	deepkoala