Gene detail

Detailed information of ENSAPQP00000028767.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: CAB3998664.1, double C2-like domain-containing beta isoform X1 [Paramuricea clavata]
Species abbreviation LSARM · all data for this species · gene families

Sequence

CDS

Transcript

ENSAPQT00000032188

GGTCTGGTGTTTGCTCCAACTTTGCTGCAACGCATAACAAAAGCGAGAACGTTTTGGAACGGGGGGGAGGTAAGAAAGTGTCAAAAAACATACAAAGATTAAAgatcaaaacaatgaaacaaGCGAAGCAGAACGAGAAATCTCAAGGTCACGTTACAGTAGGGTAGCTTGATTTCGATCTCGTAGTTTCTCTATTTGTATCGAATCGCAGCCTGTGTTTGCGATGGACCTTGACGAAAAGAAAATTGCGGAAGATCCTTGGGTATGTCCGAACGACAGAGAATTGGGACTACGTGCAAAGCTAGAAAGTGGATGGTCATTTTACACAAACAGGCAGCAGACTGGAAAACGAACCTCAATAAAACAAGAGGAAATTTCCACCATTGCAGCAATTATTAAGAAAGCAGAAGAAGTCTCCTTAAGGGAAGAATATAGAATTGGGAGGCTTGTTGATCGTCTGGAGAATATAAAGAATAATGCCCAAGGCAATGGAGTTACAACATGTCTATTATGTGATGAAAAGTTTGGAAAAATTACAGCAACACCAATAAAATGTAGCATTTGTGAAAAGGCTGCTTGTGCGAAGTGTGGAGTTGACACGATGAGCAGTGAAAATGTTCCCATCTTTCTTTGTAAACTCTGCAATGAACAAAGAGAGTTTTGGAAGAAATCTGGAGCGTGGTTCTTTGGACAACTGCCCAAACATGAATTGCCTCCTGCAAGGGATCGACATTACTTGACGTCAGGGAGTTTCATTGTCTCAACGCCAGAAATGAAGAACAAAAAGGGAAACTTACTGAGCCAAGCAAGCGAATTGTATTCAGATTCAGATGTGGAATCCGATCCTTCCTCTGAAGAAATATCCGAAGATCAACATCATTATAGAAGGCGAAGATTCGCTCGACATACAAATCGCAAGGAAAAGTCGCATTCGTTGGATAGCGAGCATGAAATGCCTCAAAATACATTGGACGCCATGGAGAGATTGGATGTGAACTCCCGTCGTTCGTCAGGTTTATCGTTCGATCCCAGTCAACCAAGATCAGAAACGTCTAGTCCATCCATATCGGGTCGACCCGGCTCACGCCAGAGTAGTCATGATATGTCTGATGATGATCCAGAGTCGAAAAATAGTATTCTTCGCCGCAGTCCATTGATGGTTCGCAAGAAAAAACGCGCCCGCGATCACAGCCCTGAACGCAGAGGAAGCGGTGCATCTTGGACTAGCGACACAGTGTCTGAGCAGAATGCGAGCCAACTGCCTCGTAATGGAAACGTCGGGAATGGATTGCACGAAGTAGACGGTCCAAAGGAAGAACTGAGAGGGCCTCTTGGTGTTATTGAGTTTACTGTGAATTTCATAAAAGATGCCAGGCGTCTGGATGTTCATGTACATCATGCCAAGGGATTGCGGGCAATGGACTCTGGTGGTTCTTCGGATCCATATGTCAAAGTCCATCTTTTACCAGGAGCTACTAAGAGCAATAAAACTCGGACCCAGACACAACAGAAGACCTTGAATCCAATATTCAACGAGACATTGACATACCACGGCATAACAGAGGATGATATGAAGAACAAAACGTTGAGACTTCAAGTGCTTGATGAAGACAGGTTAGGAAGAAATGACTTCATTGGCGAGACTACCATACCATTGAAATCAGTACTTGTTACAAACAACAGAAAAATGCAAAAAGTTCTGGAACCAAAATCTGAGGTTGCAATGAACAATGCTACGTTAGATAATTCCCCTGGTCGCATCTTCGTCTCGTTATGCTATGTATCGAAGGACAGTAAACTGGTTGTTGGCATTATACGTTGTTCTAATCTGGTCGCTATGGACTTGAATGGTTACTCTGACCCATACGTAAAATGTTATTTGCTACCTGACCCGAGCAGGAAGACAaaacgcaaaacaaaagttaaaAAGCGCAATCTTAATCCGGAATTCAATGAGCAATTTAACTATAAAATTGGTCATAATGAACTGGCGAATCGCACTTTGGAAATTACTGTCTGGGATCACGACGTAGGAAAATCCAACGACTTCATTGGTGGTGTTCACTTGGGAATACATTCTAAAGATTCCTTACTTAAACAATGGTTCGAGACCCTGAAACATCCCAACAAAGAATCCAAGTATTGGCATCCCTTAACAAGAGACATCACATTGAATGAAGGAGAATAATTACACGCGTTGTTTGGATTAAGATTGCTATTAATAAATTTCCGACGCAGAAAGTCAGATGCTCAAAGCATACCTAAACTAAATACCTGAAGAATAATAATGTAGGTTAACATACAATTCTCGGAAGTACAGTACGAAAGGTATAATGATTTTTTCAGCCTTTCTCCATTTATTTGAATGTATGTAACACTATAACATAGAACACTATAACATGAACATAATTGAGAATAAAGTTTTAATGGATTTCTACtatagaataaattttaatctaCAGTATTAAAGCAAGAAAGAACAAGATCATACGTATCACCATGTAGATAGAGGAAGCATCTTGAAATCAGTCATTTTATgcattatgcaaattatgcaaattaggttTGCAGAGATGTTATTCCAGTTATCATACTGAGCTCAGCGGTTTATTCTGACACGTTTACTTCAGTTCTGGAAGGTCAAAGATTTGTGTAAAAATTTGTCTTTTTCTCTCCAAGAATCCACAGAAAAC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P47708	Rabphilin-3A OS=Mus musculus OX=10090 GN=Rph3a PE=1 SV=2
P47709	Rabphilin-3A OS=Rattus norvegicus OX=10116 GN=Rph3a PE=1 SV=1
Q06846	Rabphilin-3A OS=Bos taurus OX=9913 GN=RPH3A PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000239 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00168 all species →	C2	C2 domain	Domain	Interproscan
PF02318 all species →	FYVE_2	FYVE-type zinc finger	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043566 all species →	Family	Rabphilin/Doc2/Noc2	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR010911 all species →	Domain	Rab-binding domain	Interproscan
IPR017455 all species →	Domain	Zinc finger, FYVE-related	Interproscan
IPR001565 all species →	Domain	Synaptotagmin	Interproscan
IPR000008 all species →	Domain	C2 domain	Interproscan
IPR035892 all species →	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR041282 all species →	Domain	FYVE-type zinc finger	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR047022 all species →	Domain	Rabphilin/Doc2, first C2 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45729 all species →	RABPHILIN, ISOFORM A	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0031267 all species →	Molecular Function	small GTPase binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19938	RPH3A; rabphilin-3A	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.