Gene detail

Detailed information of ENSAPQP00000029324.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: CAB4005124.1, PDZ domain-containing 8, partial [Paramuricea clavata]
Species Leptogorgia sarmentosa · all data for this species · gene families

Sequence

CDS

ENSAPQT00000032798

GAAAAGAATATAACTGTACACTTCTTTAAAAAACTCTCAGAATTACCAGAAGAAGAAATCATAGAACGGCTGAGAACACCCGAAACATGTGTTTGTTTGAACGTCGTATTTGCTTTTTTGTGGAAAGAATGGCGAGATACGCCTGAAATGAAACGAATATTCATATCAAAATTGACGAGAGAATTCAATGATCTTATTGGTTCAAAAGCAGCTAAGGGAATTATCGAGGAAATCAATGTCAAAAGCTATAATCTTGGTGAATCATTGCCTGTTATCAAAGATGCTGCATTGATAAACATCAAGTCCCAAAGCGCGGAGGATGTTCCTGATGAAATCGATATTGCACTTAACATTTCATACTCCGGTGGATTTTACGTTAGCGCGGATTTGGCCCTGGCCTTGAGCAAGTCTGTTTATTTATCTATCAAAGTTGTGAAAATATCCGGGAAAGTGAAATTAAGTTTTCGAAGACATCCTACTTCACGTTGGTCGTTTTCTTTTTACGAGgAACCTGAGCCGACGATTGAACTTGATGCTGAGTCACGATTTGAAGGGAAAAACTTTCAACAGTTGaattcgttaatcataaagcATTTTAAGAAAGTGATTCGAAGAAAATACATTTTACCAAATTATATCATTCGTTATAAACCATTCCTTCGAGCTAAGATCCCCCAAGATGAACAAAATGGGTTATACATTCACAACTCGCAAGTTACTGTTGGTTCAGTGGCAGTCGAAGTTGTTGGTTGCAGCCGTcttccattgaaaaagaaaagtaaTGCTGAAAGTTGGACATTCTGTAGTCTGTCTGTTGATTCCATTCCTTTTGTAGAGCGAAAGAATGATGACCCTGCATTATGGCCAATTGCAGAGTGCGAGGTAGTACGAAGTAATGAGCGAAAAATTGGTCTCACATTTCACGAAGTTTCCTACACCGGAGGAGATAACAACCTGAAGAAAATTGTCATAGACAGTATTGACCCAGACTCTCCAGTTGACTATAGCTCTCTAAAGGAAGGTGATATTATATTGGAAATTAACGGAATGCCTGTTGTCGATGCCAAGCAAGCCTCCAAACTTATCCGAGGATCAAGTAGAAgGCTTTCTATCATGGTTAAAAGGCCACCATCACACATGTCAGTCTCGAAAAGCAAGGAACTTTCACAGAAAATTGACTTCGACTTGGCGTCTGTTTCGGGGGAAAATGCTACTGAATTTAATGAAGTTGACAATTTTCAAGATGAATTTATTAATATCGTGATGCCGCTGATCAAGAATGGTCCGGATGACAGTCAGTCTGTCAGAGGAAGAGGCGACGACACCATATCAAATTCAAGTGTTAAAAGTGAATATGAAAAATCTGGAAAGTTTAACGCTGAGGTCCCCCCGTCCAGCCCAATTTTCCTGGAGAAAACTCAACAAAGAAATAATGAATGTGAGGAAACATTTATCGGCGATTATGAGAAAGGatcaaataattttgaaaaaaagacAAGATTGATGAAATCCTCCAAGAATCCGCAGTGGAATGAAACATTTGAACTCCAAGTCGAAAAAGAACATAAATATCTCAATGTTCTTCTCTGGTATCGAATTCGGATTGAATCTGCAAAGGAAGACAACAACGAAGAACATCAAACGAAAGACTTACTTCTCGGTTATGTCACCATCCCATTGACAGACATTGCAGTTCAATGTTTAGAAACAGGTGATCGATATCATCAACAGGATTATGTTCTTGTTTCAACTGCGTACGATAAAGTGTTATCAAGTCGATCTCATCTCAATGGCCATCCTGGTCTGAATAGAGTTGCATGTGGTGGTGATATAACATTGGCTTTTACATACAAACCATCTTTTGTTGATGACGAAGAAACATCTCAGACATCAGTAAAGACCAAGGTTCTGACATCAGAAAATATCGATAAGATATTAGTCACTCAATATAGTAAATTGTCTTGTTTTGATTTCAGTTTTGAAGCAAAAAAGCACGACTTCAAGGACACCCAGTTTTACTATCAAACCAAATGTAACTTCTGTACGAAAAAGATTTGGACAAAATCCGCATATCAATGCCGCTTATGTGGCATGGCGTGTCATAAGAAATGTTTGCAACGAGCGCAAACGTATACACAGTGCTACAGGTTTAGATTATTTTATTCCAgtctatattttaaccactaTGTTAAGATATGGGCGAAGATATGGCCCGCCATTTTACCAGAATTTCAACATAATTTGTTGGATCAATATGTCTTTACAGTCAGCACTCAGACCCAACGAAGGAAGATGAAACGGAATCCCTTGCTTCACAGGTAA

Transcript

ENSAPQT00000032798

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005389 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00595 all species →	PDZ	PDZ domain	Domain	Interproscan
PF00168 all species →	C2	C2 domain	Domain	Interproscan
PF00130 all species →	C1_1	Phorbol esters/diacylglycerol binding domain (C1 domain)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001478 all species →	Domain	PDZ domain	Interproscan
IPR000008 all species →	Domain	C2 domain	Interproscan
IPR031468 all species →	Domain	Synaptotagmin-like mitochondrial-lipid-binding domain	Interproscan
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan
IPR035892 all species →	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR002219 all species →	Domain	Protein kinase C-like, phorbol ester/diacylglycerol-binding domain	Interproscan
IPR046349 all species →	Homologous_superfamily	C1-like domain superfamily	Interproscan
IPR039275 all species →	Family	PDZ domain-containing protein 8	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21519 all species →	PDZ DOMAIN-CONTAINING PROTEIN 8	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0008289 all species →	Molecular Function	lipid binding	Interproscan
GO:0044233 all species →	Cellular Component	mitochondria-associated endoplasmic reticulum membrane contact site	Interproscan
GO:0051560 all species →	Biological Process	mitochondrial calcium ion homeostasis	Interproscan
GO:1990456 all species →	Biological Process	mitochondrion-endoplasmic reticulum membrane tethering	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24060	PDZD8; PDZ domain-containing protein 8	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.