Gene detail

Detailed information of ENSAPQP00000029329.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: CAB3986722.1, inturned isoform X1 [Paramuricea clavata]
Species Leptogorgia sarmentosa · all data for this species · gene families

Sequence

CDS

ENSAPQT00000032803

ATGCCTGAAAGGATCTCTCGATGGCCAACGCCAAAGAAACGTGCGAGTAAAAAGGAGCTTCGTCAGACAAGAAATCATCTTTTACGCAGCTATGAAAAAGCTCCATGGGTATCAGAAATAAAAGACAAAGGGGATTTATTTTACGTGGAGCAGTATGTTGATGTTTCAAACATGGGACATTCCATTGGGGAACATAAACAAACAACATATCAACAAAATGGCGGTCAAGTGACAAAAGATAAACGTGTTGGTGGAAATAGATTTCTTGATCTTTTATCACCaatgaaaaagacaaaaaagacGCCAGATATTACCAGTTTACAAcagaacgatcatgataaacaaCAAGATGTAATGAATGTTGAAAGGGATGCAAAAATTGAGGTCAAATTACGTGTGGACCCACCAAGAATTGGCCCATATAAAAGAGATGATTTACAAAGTGTACTGGGCATTATACCACGCAAGTATTCAGCTGCAAATGATAGAGATGAACTATATATGGATTATAGAGATTCAAAGATTATCATTGCAGGTTTTACACCAACAGGACCTGCACATGCATCAAATGAATTGGAGATTGGTGACATTATTTTAGCATTAAATGGCTTGGAGataaatacaaacaatattaATGCTATGTTGCGAGCAATTCCTGGAGGAAAACCTGTGACACTTAAGATCCAGAAACATCCTCCGCCTCTTTCTCAGTTTGCTGTTAACAATGGTTTCATTCAGAATGATAATCATTTATTAAAACCCATTGGTGGAAGAAGGGATAGTGAGAAAATGAATGAACTTCAAGATATTCCACATGCTATCATGTTTCTTTCACTCGACATTTCCAGTGAAGATGAAGTTGAAAAGGATATATTGTTTCAATTTCCCAAAGAATCATTTCAGAAAAGCATTTTTCCACTTCGTGGAATATTTTTAACCTTGGGCGATTTGTTGACCACTCTGACTGGCTCAAGTCCACGTAGTACAAGTGTTGTGATTGAGGAAAGATTAATTCATATTGGATatcagaaatgtaaacaagaaATCCTTGTTTTGGCTTTACCGGCAAGTCGGGTTACCTTACTCCATCTAAATATCTTGATGGAGAATCTTAATCGACTTCTTTGTATGATGTTTGGGTCACTTCACAGGGCTTTCTGCGATGACTGTAACACATTACGTCTGGAGTGTTTCTTCTCATtaatatttgaatatatacTTGGTACAAAGTCATTATTTGCTGATTCAAACAAGAATATTGATCCATTGGATGGATTCATAAATTGTATCGATGCAGCGAGATGGTTGGATTTACCTTCAAAATCAAAGGTTGACATAGATACATGCTTAAACGAAATAGAAGCCAATGATTGTGAATGGgcTACTGAATCGTTTACAATGAGAAGACAATATTTAGTTCTTGGCTCATGTTTATTTTACAAAGGCGTTTTGGTAGGGAACCATCTTCCTACTGAAGACTTGAAAGATATCGTGTTGTACTGCAGATTTCATTGCTTGTTCACTACATCTGAGCAACAACGATTGGCACAATTAGTTATCTGGAGGGAGGTATTTCTAACAAAAAAGAACAACGACAATTCTGAAAATTCTGAGTCGATTTCAAATTGCGAGCCTAGAACATTTCTTTTGATAGTGGGATTGGTATGTATATTTTTTTTTTACTTCTGTTCTGTACTTTCTGCTTGGAAaGCTAATGGTAATCCTGGTCCAGATCCCTACTATATTGATCAAGCTAAGAATATACTAATCGAATTGGAAGATTTAGAAATTCCCGCAGCATGCGAAGATAGGATTCAGAATCCCAGCACTCCACCCACGGTAACGGCTGATCAAAGCCCAGTGCGTAGTAAGTCCGCAGAGAAAATGACTCATGAAAGTAAAGGGAAATTCACAACAGGTTCagtggaaaatttgaaaacgtcaGGTGTAGAAGAAACAGAATCTGTTCATTCCGAAACCAGTGGAGGAAATATTGGTCCACCATACCATCGCAGAAGGCAAAGTTCGAATGTTTCAGATGGTTCAAAAGGCAGTGCTGGTAGTACTAGCAAAATGATATCAAGAAATATAGTTACTCCACCTTTAACTTTGGCAAAGTTGAGAAGAGATACGGAGAATGTGGGCGatctaaaatttaattatcTTAACAAATTGTCTTCGGGTGAAGAAAACACGATATTTCATTACGTCGTACACAATACATTTCATGGAATTATTATGTCACCATTTGTAAACGCGTCTAAAGGAAAACTCCACGATGCAGTGCTCGAAAATTTCAACCAAGCATGTGTGAAGATTAGAAGACATTTTCGACGTAATTCTTCCTTAAATGAGAGCAAGTCATGTGACACACAAGACAAGCATTTCTCGTCGACAGCATCAGACTCGGTCACTGAGATGGGGATACAGTTTTGTATTGCAGATACCAAACGACATGAACCGTTATTAAAATATTGGGTTAAAGGGAGACTATTACTAAATGGTGGTCCGAAGGAATTTTATGTATGTTACCAAGACACTGCTGCTCAAAATATGGTAGAACTTGCTTTTAAACTAGGCTTTGGTTCACCACTGTGA

Transcript

ENSAPQT00000032803

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
E7FCN8	Protein inturned OS=Danio rerio OX=7955 GN=intu PE=3 SV=1
Q2I0E5	Protein inturned OS=Xenopus laevis OX=8355 GN=intu PE=2 SV=1
F6U5F9	Protein inturned OS=Xenopus tropicalis OX=8364 GN=intu PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002100 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19031 all species →	Intu_longin_1	First Longin domain of INTU, CCZ1 and HPS4	Domain	Interproscan
PF19032 all species →	Intu_longin_2	Intu longin-like domain 2	Domain	Interproscan
PF00595 all species →	PDZ	PDZ domain	Domain	Interproscan
PF19033 all species →	Intu_longin_3	Intu longin-like domain 3	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan
IPR001478 all species →	Domain	PDZ domain	Interproscan
IPR043987 all species →	Domain	CCZ1/INTU/HSP4, first Longin domain	Interproscan
IPR043988 all species →	Domain	CCZ1/INTU, second Longin domain	Interproscan
IPR039151 all species →	Family	Protein inturned	Interproscan
IPR043989 all species →	Domain	CCZ1/INTU/HPS4, third Longin domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21082 all species →	PROTEIN INTURNED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0001736 all species →	Biological Process	establishment of planar polarity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005929 all species →	Cellular Component	cilium	Interproscan
GO:0007399 all species →	Biological Process	nervous system development	Interproscan
GO:0060271 all species →	Biological Process	cilium assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22862	INTU, CPLANE4, PDZD6; protein inturned	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.