Gene detail

Detailed information of ENSAPQP00000029414.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: XP_028414195.1, cleavage stimulation factor subunit 3-like isoform X1 [Dendronephthya gigantea]
Species abbreviation LSARM · all data for this species · gene families

Sequence

CDS

ENSAPQT00000032895

ATGGCATATCGAAGCAAGACCGAAAGAGGTCAAAAGGCAGAGCAACGATTGTTAGCAGATCCATATGACACTGAGTCGTGGAATGTTTTGTTGCGAGAAGCTCAGtCATTGCCTATTGCGAATGGAAGGCTGCTCTATGAGAGACTTGTTGACCGTTTCCCAACCTGTGGTCGCTATTGGAGGCTATACATTGAACAAgagatgaaaagcaaaaattaCGACAAAATTGAACAGCTATTTCAAAGATGTCTGATGAAAGTTTTAAATGTTGATTTGTGGAAGTCGTATCTGCATTAcgtgaaagaaacaaaaggtTCCTTGCCGTCGTTTAGGGATAAAATGACACAAGCTTTTGAGTTTGCTCTTGATAAAGTTGGGCTGGATTTCAATTCATATCAGATATGGTCGGACTATATCATATTTTTGAAGGCAGGaGAAGTGAGTGGCTCTTACGCCGAGAACCAGAAAATTATGACACTTCGTAAAGTCTACCAGAGAGCTGTTTTCACTCCTATCAATAATCTGGAATCACTGTGGCGGGAATATACAGCATTCGAGCAGAGTGTCAATAAAGTTTTGGCTAAGAAATTAATCGATGATAAAACACGTGACTATATGAACGCGCGAAGAACGGCGAAGGAGTATGAAGCAATAACGAGAAACATCGTACGTGGGAATCCTTCTGTACCACCTCAGGGAGCACCATCTGAAGTGAAACAGCTTCAATTGTGGAATAAATATCTCCAATGGGAACGAAGCAATCCACTTAAAAGCGAGGATCATGGCGTGCTCACAAAAAGAGTAATGTACGCGTACGAACAAGCATTGTTGGCACTAGGTTTCTACCCGAATATTTGGTATCAGGCTGCGTTATATTTAGAAGATAGAAGTAAACAACTCCTTGAACGTGGGGATCAACAAAACGGAAAGATAATGGCAGACGACGTTAGCGCAATATATGAACGAGCCACTTCTGGTCAAATGAAATTTAATGCAATGTTGCACTTCGCTTGGGCTGATTTTTTGGAGAGTCGGATGAAAGCAGATAAAGCTAAGGAAATCTACGAGAAATTATTGGCAACCCCAAACGTCGATCCTACTTTGGTGTACATTCAGTACATGAAATTCTCGCGAAGGGCCGAAGGAATTAAAGAAAGCCGAGCGGTGTTCAAGCGCTCCCGAGAGGACACGCGGAGTTCCCATCATGTTTTTGTTGCGGCAGCTTTAATGGAGTACTACATAACGAAGGACAAAAATGTGTCAATGAAGATTTTCGAATTAGGATTGAAGAAATTCTCATCTGAACCGAATTACATAATGGCGTACTTGGAATTTCTAATCAACCTaaatgATGATAACAACTCTCGAGTCCTATTCGAAAGAGTCCTCAGTAATCTTCCGAAAGAAAAGTCAAGTGAAATTTACACGAAGTTTCTCGATTTCGAAGCCAACTGTGGTGATCTTACGAGCtatatgaaagttgaaaagaGAAAGTTGTCCATGTTCAATGAGGAACTTGAATCCCGAGAAACTGTGCTACTGGTTGATCGTTATAAGTATTTAGATCTCTATCCGTGCTCACAAACTGAACTGACAGTTATTGGCTATGAGgcGCAAGATACTGTGGTTTCAAATCAACCCTCAACGTCTTCTCAAAATAAGATTCTTATACCGGATGATACAATCACATTTGCCTCGAGATATCCAATGCCAGATCTTAAACAGATGATGCCATTCAAACCTGCTCCGCGGGGAACTGCTGGAGTCCATCATATTCCGGGGGGTGTGTTTCCTATACCGCCTTCGGCTGCCCATCTAATATCTTTGATGCCGCCGCCAATATGTTTTCAGGGCCCGTTTGTGATGGTTGATGAGCTCTTAAAAATGATAGCTGAATGTCATCTTCAAAAACCACAAACCACAAgTTTGCCAGAAGGCAGTATTAATGGCGGTGTAAAGGAGGAAAGTTCAGTAAAAGACGACGCCAGAGGAACGAAGCGTCCCGCGAACAGTAACGACAACGATAGCGACGACGATGAAAAACGTGTTGTTCCTCCTGTGAACGACATATATAGGCTAAGGCAACAAAAAAGAGTCGCCTTCTAA

Transcript

ENSAPQT00000032895

gttctttgttttcgcACATGGTTTGTTTGTTGTTCGAATCGAATGATCGATCGATGTCGTTATCGATCGAGgatattatttacaaattctTGTGTTCCTGAACAATCTTAACCTCCATTTTAGCTTGGAAACAGACTATTGGACCGAATTTGTAGTGATCTGCTAGAAGCAGACGCAAAAGGATGGCATATCGAAGCAAGACCGAAAGAGGTCAAAAGGCAGAGCAACGATTGTTAGCAGATCCATATGACACTGAGTCGTGGAATGTTTTGTTGCGAGAAGCTCAGtCATTGCCTATTGCGAATGGAAGGCTGCTCTATGAGAGACTTGTTGACCGTTTCCCAACCTGTGGTCGCTATTGGAGGCTATACATTGAACAAgagatgaaaagcaaaaattaCGACAAAATTGAACAGCTATTTCAAAGATGTCTGATGAAAGTTTTAAATGTTGATTTGTGGAAGTCGTATCTGCATTAcgtgaaagaaacaaaaggtTCCTTGCCGTCGTTTAGGGATAAAATGACACAAGCTTTTGAGTTTGCTCTTGATAAAGTTGGGCTGGATTTCAATTCATATCAGATATGGTCGGACTATATCATATTTTTGAAGGCAGGaGAAGTGAGTGGCTCTTACGCCGAGAACCAGAAAATTATGACACTTCGTAAAGTCTACCAGAGAGCTGTTTTCACTCCTATCAATAATCTGGAATCACTGTGGCGGGAATATACAGCATTCGAGCAGAGTGTCAATAAAGTTTTGGCTAAGAAATTAATCGATGATAAAACACGTGACTATATGAACGCGCGAAGAACGGCGAAGGAGTATGAAGCAATAACGAGAAACATCGTACGTGGGAATCCTTCTGTACCACCTCAGGGAGCACCATCTGAAGTGAAACAGCTTCAATTGTGGAATAAATATCTCCAATGGGAACGAAGCAATCCACTTAAAAGCGAGGATCATGGCGTGCTCACAAAAAGAGTAATGTACGCGTACGAACAAGCATTGTTGGCACTAGGTTTCTACCCGAATATTTGGTATCAGGCTGCGTTATATTTAGAAGATAGAAGTAAACAACTCCTTGAACGTGGGGATCAACAAAACGGAAAGATAATGGCAGACGACGTTAGCGCAATATATGAACGAGCCACTTCTGGTCAAATGAAATTTAATGCAATGTTGCACTTCGCTTGGGCTGATTTTTTGGAGAGTCGGATGAAAGCAGATAAAGCTAAGGAAATCTACGAGAAATTATTGGCAACCCCAAACGTCGATCCTACTTTGGTGTACATTCAGTACATGAAATTCTCGCGAAGGGCCGAAGGAATTAAAGAAAGCCGAGCGGTGTTCAAGCGCTCCCGAGAGGACACGCGGAGTTCCCATCATGTTTTTGTTGCGGCAGCTTTAATGGAGTACTACATAACGAAGGACAAAAATGTGTCAATGAAGATTTTCGAATTAGGATTGAAGAAATTCTCATCTGAACCGAATTACATAATGGCGTACTTGGAATTTCTAATCAACCTaaatgATGATAACAACTCTCGAGTCCTATTCGAAAGAGTCCTCAGTAATCTTCCGAAAGAAAAGTCAAGTGAAATTTACACGAAGTTTCTCGATTTCGAAGCCAACTGTGGTGATCTTACGAGCtatatgaaagttgaaaagaGAAAGTTGTCCATGTTCAATGAGGAACTTGAATCCCGAGAAACTGTGCTACTGGTTGATCGTTATAAGTATTTAGATCTCTATCCGTGCTCACAAACTGAACTGACAGTTATTGGCTATGAGgcGCAAGATACTGTGGTTTCAAATCAACCCTCAACGTCTTCTCAAAATAAGATTCTTATACCGGATGATACAATCACATTTGCCTCGAGATATCCAATGCCAGATCTTAAACAGATGATGCCATTCAAACCTGCTCCGCGGGGAACTGCTGGAGTCCATCATATTCCGGGGGGTGTGTTTCCTATACCGCCTTCGGCTGCCCATCTAATATCTTTGATGCCGCCGCCAATATGTTTTCAGGGCCCGTTTGTGATGGTTGATGAGCTCTTAAAAATGATAGCTGAATGTCATCTTCAAAAACCACAAACCACAAgTTTGCCAGAAGGCAGTATTAATGGCGGTGTAAAGGAGGAAAGTTCAGTAAAAGACGACGCCAGAGGAACGAAGCGTCCCGCGAACAGTAACGACAACGATAGCGACGACGATGAAAAACGTGTTGTTCCTCCTGTGAACGACATATATAGGCTAAGGCAACAAAAAAGAGTCGCCTTCTAAACTCAACTGGCGCGACAAAGTATCAAAATATCTTGCAGTTCCATCTTCCCAATCGCTTTTCTTTTTCGGCGGAGTTTTTGGAATGCATTATTTATTTTGCCGTGAGAATGCATGTCATGACCGCGGGTAAATGATGTCAATTGTCAAGCATTTGTAAAAAGTTCTTTGCTTTTTTgtgaatacaaaaaaaaaactggAACCGTAGGAATTTTTGTTCAACCAATTACCGCCCTTTGAAAGAGCTATAACGCGACGCATGATGTAAAATAGTAGCGGTCACATCTGTAGTTACAttcttgcaatattttttattgaaaagaGAGTTTGAAAATCAACTTCGTTCCCGTAAAAGTTGCAAGATGCAAGTCTgtctcaatattttttatccGGAAAATTTGCTAGCAAAAGTAGGGATGATTCCTACTTTTTTTAGGAACTCGAAAAGCCCAAGCAAGTGTGTGGGCTAAGAAGTCTTCAAGACGCATGAGGCATACCACGTCCGTATACTTTTCCGACatattgtttactttgctaaaGCTGCTCTCGACGAGGTAAACACTTCAAGCACGCGTGGGGGgctttgtatattatatatatagacgTCAGAATCTCCACAGAGACATTAGAGTTTCGATATCAGCATGCATCAAACGTCAACATGGTAACAACTaattttagtagaatcattaTAGTATAcaattgcaaatgctgcaatttgattggctactctagtCGCTATCTATATATTCCTtgatagatatcgagtagcaaaacatgtgaattttcgttaaaaaaatgtcttctgagacgcgttgtca

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q12996	Cleavage stimulation factor subunit 3 OS=Homo sapiens OX=9606 GN=CSTF3 PE=1 SV=1
Q5RDW9	Cleavage stimulation factor subunit 3 OS=Pongo abelii OX=9601 GN=CSTF3 PE=2 SV=1
Q99LI7	Cleavage stimulation factor subunit 3 OS=Mus musculus OX=10090 GN=Cstf3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004111 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05843 all species →	Suf	Suppressor of forked protein (Suf)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008847 all species →	Domain	Suppressor of forked	Interproscan
IPR045243 all species →	Family	mRNA 3'-end-processing protein Rna14-like	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR003107 all species →	Repeat	HAT (Half-A-TPR) repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19980 all species →	RNA CLEAVAGE STIMULATION FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006396 all species →	Biological Process	RNA processing	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0031123 all species →	Biological Process	RNA 3'-end processing	Interproscan
GO:0031124 all species →	Biological Process	mRNA 3'-end processing	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14408	CSTF3, RNA14; cleavage stimulation factor subunit 3	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.