Gene detail

Detailed information of ENSAPQP00000029581.1 in Leptogorgia sarmentosa

Genomic Location: chr4:20285676...20294360
NR annotation: CAB4000769.1, transcriptional regulator ATRX-like, partial [Paramuricea clavata]
Species Leptogorgia sarmentosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSAPQT00000033070

CATGATGCAATACATGACCCAGTACATGACCTAATAACGGTGGGAGACCCAGACCAGGTCACAACTGACATACTTGATAACAACCTCACCATCGTCAAAGCTCTTCCATCAgatgatgaatttgaagaAACACCTCAAGATGAAAAAATGAGCAATCAAACTGAAGAAAAAgttaagaaaaagaaaagtgaTTTCAAGGAGCAAAATGaTACAGATCTTAAGGTTGTTAATTGTACTGCTTGCAATAAGAATATTGTCACGAAGAGAGGAAAATTTTGCAGACACCCTGaccttaatacaataatatGCAAGTCATGCTACAAATTCTACAGTAGTGGAAAATTTACAAAAGATGAATATGGTGTTGAAGAGTTCTGTCGTTGGTGTGCTGATGGCGGTGAACTTATTTGTTGTGATTTTTGTGAAAAAGCATTTTGCAAGAAATGCATAAAAAGAAACTTGGGGAAGTCTAAGTTAAAAGAATTACTTGAAGCAGACGAAGATGAGAAATGGAAGTGTTTTTGCTGCAATCCCGCACCAATATCTGATATCATCAAATTGTGTAAAAGAGTTATGCGTGTCCTGGATGAAGAAAAAGACCAACACAGCCCTTATAAAGATAGGAAAGGTCGGGAATTCATACACGGACCAAACAGAAGCGAAAGGAGGAATATATTAACCAACCTGTCTGACCAACGAACGACAAAGAAAAAGGCGAATAcacatttaaattttaagaaaACGTATTCCATGCGTTCTCAAAATGGAGATATTGCTGACGTTTtgcaaaacaaagaaaattctGACGATAACGACATTGAACAGGTAACTGTTGAACAGGTAACTGTTAAAAAGGAGCGAGAAGAAAAATGTAAATCAGATGTTACGACGGTCGAATCAGGCAAAGATAATGATGTCAGTTCCGATGAGCTTTCCGGAAGTGATAAGGTATTAAAATCTAACAAGAAGATGAGGATAACTGAGAACAGTTCTGATGAGCCTTCCGGAAGTGATAAAGTATTGAAATCTAACAAGAAGAAGAGTTTGAGGATAACTGAGAACAGTTCAGATGAGCCTTCCGGAAGTGATAAAGTATTGAAATCtaagaagaagaagaggatAACTGAGAACAGTTCCGATGAGCCTTCCGGAAGTGATAAAGTATTGAAATCTAACAAGAAGAGTTTGAGGAAAACAGAGAACAGTTCAGCGGAGCCTTCCGAAAGTGATAAAGTATTGAAATCTAACAAGAAGAAGAGTTTGAGGAAAACAGAGAACAGTTCAGCGGAGTCTTCCGAAAGTGATAAAGTATTGAAATCTAACAAGAAGATGAGGAAAACTGAGAGCAGTTCAGACAGTGATTCagttcaaaagaagaaaagaaagaagcaagaaaaaaatccCAAAAGCACTTATCGCgttaaaatagaaaataaagaTGCGAATAGCAGCTCGGAAGAGGAGATTGGCCgctcaaagaaaaaaaagcaggataaaaaagaaaatggaaATTCGAAATCTGATAGAAAGAGAATTGATCGTGATTCAGCTGATGACATTGTCCAAACCAAAAACAAGAAGGGTACAAGAAAAAAGAAGTTTGCGGTATCTTCAGATGAAGAACAAACAGATGAGGAAACAGATCCAGATGAGCGTGCAGATTCTAGTGAACAAGAATCGAGTGAAGAAGAATCTAGTGTACAAGAGTCAAGTGAACCTAGCGTTAAAAGGAGAAAAAGGAATAGTAAGAAGAACAGGAAACGAGATATTCAAAGTTCAGATAGTGAtagtgatgttgcagattCGCCTAAGAAACATAAGAAGAAGGGAAGCAAAAAAGTTGGGAAATGGAGTTTAAGAGGAAAGTCTGGTGCAAACATTACTAGTGATTCTGAGTCGGAGAAAGAAAATGTTAGAAAATCAAAGTCTAAGAAAAAGGTGAATGCAAAGAAGAAGGGAAAATTGAAACGGAAACGAAAGAgaggtgatgatggtgatgatgatgagaGCGATGATGAAAATGCCAGTCCaaaaaaaggaagaaagaaaatccgaaaaattttgaaaaatgaaaagttGACTGAAGCAACTCGTCATGCTCGTCAGCTGGAAGAGGAAAGAAGACAACGGCTGGTGGAAAGGACCAAAAGCGTGGTGTATGACAAACCAGATAGCATTGATGTAAAAGAGGTCGTGTTAGAATACAAATCGGACGGGAAAACACCGCTTGTAGAAGTCGGAGAGGATTTAGTTCAGCACCTCAAACCACATCAAGTAGAAGGCGTGAAATTCATGTATGATTGTACAATAGAATCCGTTGAAAGGTGGAAGAAGAAAGAACCGGGTGGAGGGTGTATTTTGGCGCATGTTATGGGACTTGGCAAAACATTACAGgTGGTTTCATTGGTTCATACATTGTATGCAAGTGACCTTGTCAAGTTAAGACGTGTGTTGGTTGTTTGTCCCCTTAACACTGTGTTGAATTGGCAAAACGAGTTTGAGAAGTGGCTCAGTGTTGACGACCGCCTGGATATTTATGTACTTAATGAAGCAACTGGCAACTGGAATCGTGCTGACATGATGAAGCAATGGATGAATTATGGTGGAATTCTAATCATGGGATATACCATGTATCGCAACTTATCACAATGTCTTCGTGTTAAGAGCAAGCATCAAAAAAagattttcaaagaatctcTTGTTGATCCAGGTCCAGAATTAGTCGTTTGTGACGAAGGTCATATTCTTCGTAATTGCAAGAGCGGCATATCCATAGCCATGAATGGTATTAAGACAAAGAGAAGGATTGTCCTCTCCGGAACACCACTTCAAAATAATTTACACATTTTCCCAAATCTTTTGGGTACGTCGAAAGAATTTTCTAACAGCTTCATACGACCAATCGAAAATGGCCAGTGTGCTGACTCCACTCTGTTGgatgtaaaaataatgaaaagaaGATGTCATGTTCTTCATAAAATGTTGGATGGTTGTGTTCAGAGAAAGGATTACGCAGAAATTAAGAGATTTCTTCCTCCGAAGTTTGAGTATGTTATCAAGATCAGACTGTCGGCAAAACAGCGGgagatatataaatattaccTCGATACGTTTCTCAGTGATGAGGAGAACAAAGGAAAAGGGGGAACATTGTTCTCTGATTACCAAGCTTTAATGCGAATTTGGACTCATCCGTGGGCTTTGAAACTTGAGTCGGCAAGACAAATTGAGAGGTTTATTGATTCCGATGACAGTTTAAAGGATTTTGTTGTTGGGACTGACGAAGAAGAAAGTGAAGCCAGTGAGGAAATGTCGTGGACGTCGGATGAGAGTGACAACGGTAAATGTTTCAGTATAGTTTTCATTTCTCGAGAACGAATAACTTATCGAGGAAAAACGCGTTCTAAGAGTACATCTGGGGAAAGTGAAGACGACGATGGCAGTGAAGAAGACGACAGTGAAGAAGAAACTCCGAAGATTAGTAACAAACGGAGGTCAGAGAAGCAAACAGATGAGAAGAAAACGAGCAGGAATGCCAAAGCCAATTCAGATGGACCTTCAACATCCAAAGCgtctgttgttgttgatgttagtgatgatgatattgTGGAAGTAAAGCCTGATGTCGACAACACTGACGGTGTTAGCATGGTTGCTTCGAAATTACGTTCAGGTCAGGATTTCAAAGATCCACTTCCTGTTGAAGAGGAAGAAGAATGGTACGATAAATTTCTTACACAAGAAGATGAGAAGAATGTTGAACTCGGAAGTAAAATTGTGTTACTGTTGGAGATTCTTGCTGATGCTGCAGCTCTAGAAGAGAAAGTACTGGTGTTCAGTCATAGTTTAATATCATTGGATGTGATTGAAATGGCATTAGGTGGAGGAGAAATTGGTGGCAATACCGAAGACTGGTGTCGTGGATGTGATTACTTCCGTATGGATGGTAGCACGAGTGTGCAAATGAGAAAGCGATGGTCGGATATATTCAATGATGAACAAAATAAAGCAGCTCGTTTGTTTCTTATTTCAACCAAAGCAGGTGGACTTGGTATAAATTTAGTTGGTGCTTGTCGTGTTGTTGTCTTTGACGTATCATGGAATCCATCTCACGACGTTCAGTCTATCTTTAGAGCCTATAGATTTGGTCAAAATAAACCTGTCTTCATTTACAGATTTATTGCAGAGGGCACTATGGAGGAAAAGATTTACGATAGACAGGTGACGAAGCTATCTATGTCCCAGCGTGTTATTGATGAGCATCAAATTCAGCGTCATTTCAATGCAAACGATCTCACAGAGCTCTATCGTTTTGAGCCGGACATCCTAGAGAATGAGAATGATGAACGACCAACCCCTGCAGTTCCGAAGGTAATTGAGGCCAATCAGTACGCTATGTGTTGGGACCACAATTCTTCACAAGATGCGGTTTTGGCAGAATTGATTAATCGCCTTTATCCTAAATATATTGTGAAATACCACGAGCATGATTCATTGTTGGAAAATAGACCGGAAGAAGAGTTAACGGAAGCCGAGCGAAAAGAAGCATGGGAACAATGGGAGCAAGAAAAACAAGGAATACTTAATGAATCAAAAATCAGAGCCGAAAATATGCAACGTAAGATTTTACAACTCTCGCAACAGCAGCGACTTCGCGAGCAACAACAACGTGAACAGCAACAACGTGCACAACAACAACGTGCACAACAACAACGTGCACAGCAACAACGTGAACAGCAAGAAAAGGAACGGCAACAGCGGGAAAAACAATTAGGTCAACAGTTTTTACAACAACTCTTACGAAATCAAAATGCTTATGTTACGCAACAAACGGGACAAGGTCATCCAAATCAAAGGGTTTTCCAAGTTGTTATGGATAATGATGGCGGCAATAATCCTGCCCAATCTCAACGACGACAGCGTTCACCTCCAAGGATTATTGAGCTACCTCCAGATGCGTAA

Transcript

ENSAPQT00000033070

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P46100	Transcriptional regulator ATRX OS=Homo sapiens OX=9606 GN=ATRX PE=1 SV=6
Q7YQM4	Transcriptional regulator ATRX OS=Pan troglodytes OX=9598 GN=ATRX PE=2 SV=1
Q7YQM3	Transcriptional regulator ATRX OS=Pongo pygmaeus OX=9600 GN=ATRX PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001641 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF17981 all species →	ADD_ATRX	Cysteine Rich ADD domain	Domain	Interproscan
PF00176 all species →	SNF2-rel_dom	SNF2-related domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR038718 all species →	Homologous_superfamily	SNF2-like, N-terminal domain superfamily	Interproscan
IPR044574 all species →	Family	ATPase ARIP4-like	Interproscan
IPR041430 all species →	Domain	ATRX, ADD domain	Interproscan
IPR000330 all species →	Domain	SNF2, N-terminal	Interproscan
IPR025766 all species →	Domain	ADD domain	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR049730 all species →	Domain	SNF2/RAD5-like, C-terminal helicase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45797 all species →	RAD54-LIKE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0140658 all species →	Molecular Function	ATP-dependent chromatin remodeler activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10779	ATRX; transcriptional regulator ATRX	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.