Gene detail

Detailed information of ENSAPQP00000029613.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: XP_028401443.1, LOW QUALITY PROTEIN: protein Jade-1-like [Dendronephthya gigantea]
Species Leptogorgia sarmentosa · all data for this species · gene families

Sequence

CDS

ENSAPQT00000033101

ATGCAAGAAGATGGAGCCGATGTTCCTGTGAAGGTAACAATTAAGGATGGAAAGAAACCTGCTGAGGTGTTCCGAACTGATTTGATCACAGCAATGAAAATTCCCGATCATCAGATTGTTACACCCGGCGCATATTTTGACCTCAGTGATCCGTGGAAGCAAGAATGGGAAAAAGGCGTTCAGGTACCTGTCAACAAGGAGTCTTTACGACAACCTTCTTTTAGAATTGCAAACTCGGAAAAATGTTCACTGACAGAGTTTAGAATGCCATACAAACTGATAAAATGCGCAAAAAGGAAAGCAAATGTGCCTCAAAAAGATCCCGTGTATGACTTGGATAATGAGGATGTGGAGTGGCTGAAGGCTCTGAATAATTCAAGAAAGAATCGAGGTGTTGAAGTTGTAGATGAGCTACTGGTGGAAAAAGCTATCACATGTTTGGAAGATCAGTGTTATACCAATATGGGTGAGACGATTTCTACAGCGAAAGGACTGGGTATTGAGTATGATGAAGACATAGCTTGTGATATTTGTAGATCGCCAGAATGCGAAGATGGGAACGAGATACTCTTCTGCGATGTATGTGATGTGGCTGTTCATCAGGCTTGCTACGGAGTTCAGAAGGTGCCTATTGGTAGCTGGGTTTGCAAGCCGTGCACGCAACTGTTATCCCACTGTCCATGTTTGCTTTGCTCAACACGTGGAGGCgcaatgaagaaaacaaaatcgAAGGGTGTGGAGGGCTGGGTGCACATGAGTTGCGCACTGTGGATTCCCGAGGTTGGTATAGGCAATGTGGAGAGGATGGAACCCATCACAAAAATTGAAACTATCCCACCTGGGAGATGGAACTTGTTATGCTACATATGCAAAGAGAAACGAGGAGCGTGCATTCAGTGCTCGGTGAAGACTTGCGTTACAGCGTTCCACGTAACATGCGGTTTCAATAGCAACTTAGATATGCAGACGGTGTTGGATGATGGTGCTCCTGATGGTGTTCGACATGTGtgcTATTGTTCCAAACATACTGAAAAACGAAGTGGCAGATCTCCTCGCAAGCCGACGCCCCTCAAATCGCCCCAAAATCCCTCTCCACGTACGACACCATCAAAATCTACGACACCATCAAAATCTTCATCGGATGTCAGGGCAAAAGAACAGGAGGAACGCGAAAATCTTCGCCAAAATAGGCTGCGAGGAATGGAAGAGGAGTTCTACAAATATGCAGATGTGGAAGATCTTGCCAGTGAACTCAACATTACCACAGAGCTGGCGACAACATTTCATCGATtttggactttgaaaagaaagACTCGTGAAGATGCTGCCTTGCTTCCCCCAACAGCCGAACAGCAGGAACGTTTGAGTGGGCGACAGATTAAGCCATTCCAGAAAGCAACAATGGAGGCTGAGCGAGTGGTGCGGTTAAGGCAAGACCTTGAAAGAATCCGTAACTTGTGTTACATGGTCGAAAAACGCGAAAAATATAAGAGAGAACTGACGGCAGCACGTGAAGCTGTGTTTCGTAAGGAGCTCGAAGTCTTGGAAGACACATCGGGTAGAATATCGACGGAAGATGTCCAATGGGCGCGCTCTTGTTGCGTGAAAAATTTCACCGAATACGAGGAATTACAAACGCTCGACTTGCGATGTCCAGCGAGGCCGAAGATTTACAAGAAACGTGGCAGAAAACCTAAGCGAACCGCGAGAAACTTGATGAATGGGTTTGTTCAAACTTCGCCCGTGAACCAATCTGATGGGATCACGAGTGAGCACAGCGGAGAATGCGAGGAAAGCGATTCTGTGAATCATCATCACACGGACTCTACATTCTGTTTCAGTGATAGTGTCAATGATCATTTGAGTGATCAGGAAACAACTGCTCGTATAGATGTTCCTAGCACGTCGTCATGTGACAATAATGCATCAAGCAGTACCGAGGGAAAGACGCTTGCATTGCGCAATAACACAATCGCACGTTCGACGTGCTCAAACAACGATGGTACCTCCTCGGATTCTGATTTCGAGGACGAGCGGGCTCGGAAAGCAAAACGCCGAGCAGCCATAAACCGATTGCGAGAGCGTAAGTCGTCAAAGTCGGATACGGAGATGGTTGAAGTTAGCCGATCTGGTGACGCAATGTCTAGTTTTCGTACTTCACCGATTCACGGTTCGAATAGTTCGAACATGAATCCTCCTGTCAACTCTTCGGAAGACGAAGAGGATGCGAAGAATCATCCTCGTCTTTCTCCCAACACTGTCACAAGTAGGCAACGGAAACGAAACAGAAAAAGGTCGCTTTGCGAAGTGTCCGAAAAACGCAACGAATCGCAATCCCCGAGGACACTACGATCAAATAGCACGACGGCACTGGACCAGCAGCAGCTGACATGTGACGTTGTTTCTGAAAAACGAGTTTGCCGCGCAAATGGGATGTTACACTCA

Transcript

ENSAPQT00000033101

CAAGATTTGGCCTTCCAGTTTAAGATTTATAGTTCAGTGGGTCACCGAAAAATTCCGAATGCACTCCGAAATATCCCGATGATTGTATTGCTGTCGAATATTCTCTGCTTTGGAGACTATGGCGGGAAGGATTTGCGGCAATAATACAAAAAAGTTACCCATCAAATGTGGTCCAAAATAAAATGTACGATAGACCGAAGACAGGAGAACCATAAGAGAGTAAATGTGCGCTTCAAACTTGAATTAAAATCGTAAAACACGGCAGGGAAGgaacAGAAGTCACAATGCAAGAAGATGGAGCCGATGTTCCTGTGAAGGTAACAATTAAGGATGGAAAGAAACCTGCTGAGGTGTTCCGAACTGATTTGATCACAGCAATGAAAATTCCCGATCATCAGATTGTTACACCCGGCGCATATTTTGACCTCAGTGATCCGTGGAAGCAAGAATGGGAAAAAGGCGTTCAGGTACCTGTCAACAAGGAGTCTTTACGACAACCTTCTTTTAGAATTGCAAACTCGGAAAAATGTTCACTGACAGAGTTTAGAATGCCATACAAACTGATAAAATGCGCAAAAAGGAAAGCAAATGTGCCTCAAAAAGATCCCGTGTATGACTTGGATAATGAGGATGTGGAGTGGCTGAAGGCTCTGAATAATTCAAGAAAGAATCGAGGTGTTGAAGTTGTAGATGAGCTACTGGTGGAAAAAGCTATCACATGTTTGGAAGATCAGTGTTATACCAATATGGGTGAGACGATTTCTACAGCGAAAGGACTGGGTATTGAGTATGATGAAGACATAGCTTGTGATATTTGTAGATCGCCAGAATGCGAAGATGGGAACGAGATACTCTTCTGCGATGTATGTGATGTGGCTGTTCATCAGGCTTGCTACGGAGTTCAGAAGGTGCCTATTGGTAGCTGGGTTTGCAAGCCGTGCACGCAACTGTTATCCCACTGTCCATGTTTGCTTTGCTCAACACGTGGAGGCgcaatgaagaaaacaaaatcgAAGGGTGTGGAGGGCTGGGTGCACATGAGTTGCGCACTGTGGATTCCCGAGGTTGGTATAGGCAATGTGGAGAGGATGGAACCCATCACAAAAATTGAAACTATCCCACCTGGGAGATGGAACTTGTTATGCTACATATGCAAAGAGAAACGAGGAGCGTGCATTCAGTGCTCGGTGAAGACTTGCGTTACAGCGTTCCACGTAACATGCGGTTTCAATAGCAACTTAGATATGCAGACGGTGTTGGATGATGGTGCTCCTGATGGTGTTCGACATGTGtgcTATTGTTCCAAACATACTGAAAAACGAAGTGGCAGATCTCCTCGCAAGCCGACGCCCCTCAAATCGCCCCAAAATCCCTCTCCACGTACGACACCATCAAAATCTACGACACCATCAAAATCTTCATCGGATGTCAGGGCAAAAGAACAGGAGGAACGCGAAAATCTTCGCCAAAATAGGCTGCGAGGAATGGAAGAGGAGTTCTACAAATATGCAGATGTGGAAGATCTTGCCAGTGAACTCAACATTACCACAGAGCTGGCGACAACATTTCATCGATtttggactttgaaaagaaagACTCGTGAAGATGCTGCCTTGCTTCCCCCAACAGCCGAACAGCAGGAACGTTTGAGTGGGCGACAGATTAAGCCATTCCAGAAAGCAACAATGGAGGCTGAGCGAGTGGTGCGGTTAAGGCAAGACCTTGAAAGAATCCGTAACTTGTGTTACATGGTCGAAAAACGCGAAAAATATAAGAGAGAACTGACGGCAGCACGTGAAGCTGTGTTTCGTAAGGAGCTCGAAGTCTTGGAAGACACATCGGGTAGAATATCGACGGAAGATGTCCAATGGGCGCGCTCTTGTTGCGTGAAAAATTTCACCGAATACGAGGAATTACAAACGCTCGACTTGCGATGTCCAGCGAGGCCGAAGATTTACAAGAAACGTGGCAGAAAACCTAAGCGAACCGCGAGAAACTTGATGAATGGGTTTGTTCAAACTTCGCCCGTGAACCAATCTGATGGGATCACGAGTGAGCACAGCGGAGAATGCGAGGAAAGCGATTCTGTGAATCATCATCACACGGACTCTACATTCTGTTTCAGTGATAGTGTCAATGATCATTTGAGTGATCAGGAAACAACTGCTCGTATAGATGTTCCTAGCACGTCGTCATGTGACAATAATGCATCAAGCAGTACCGAGGGAAAGACGCTTGCATTGCGCAATAACACAATCGCACGTTCGACGTGCTCAAACAACGATGGTACCTCCTCGGATTCTGATTTCGAGGACGAGCGGGCTCGGAAAGCAAAACGCCGAGCAGCCATAAACCGATTGCGAGAGCGTAAGTCGTCAAAGTCGGATACGGAGATGGTTGAAGTTAGCCGATCTGGTGACGCAATGTCTAGTTTTCGTACTTCACCGATTCACGGTTCGAATAGTTCGAACATGAATCCTCCTGTCAACTCTTCGGAAGACGAAGAGGATGCGAAGAATCATCCTCGTCTTTCTCCCAACACTGTCACAAGTAGGCAACGGAAACGAAACAGAAAAAGGTCGCTTTGCGAAGTGTCCGAAAAACGCAACGAATCGCAATCCCCGAGGACACTACGATCAAATAGCACGACGGCACTGGACCAGCAGCAGCTGACATGTGACGTTGTTTCTGAAAAACGAGTTTGCCGCGCAAATGGGATGTTACACTCAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q0P4S5	Protein Jade-3 OS=Xenopus tropicalis OX=8364 GN=jade3 PE=2 SV=1
Q92613	Protein Jade-3 OS=Homo sapiens OX=9606 GN=JADE3 PE=1 SV=1
Q6IE82	Protein Jade-3 OS=Mus musculus OX=10090 GN=Jade3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004052 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13832 all species →	zf-HC5HC2H_2	PHD-zinc-finger like domain	Domain	Interproscan
PF13831 all species →	PHD_2	PHD-finger	Family	Interproscan
PF10513 all species →	EPL1	Enhancer of polycomb-like	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR050701 all species →	Family	Histone Modification Regulator	Interproscan
IPR019542 all species →	Domain	Enhancer of polycomb-like, N-terminal	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR019787 all species →	Domain	Zinc finger, PHD-finger	Interproscan
IPR034732 all species →	Domain	Extended PHD (ePHD) domain	Interproscan
IPR019786 all species →	Conserved_site	Zinc finger, PHD-type, conserved site	Interproscan
IPR001965 all species →	Domain	Zinc finger, PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13793 all species →	PHD FINGER PROTEINS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSAPQP00000029613.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.