Gene detail

Detailed information of ENSAPQP00000029689.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: CAB3990134.1, eukaryotic translation initiation factor 3 subunit E [Paramuricea clavata]
Species abbreviation LSARM · all data for this species · gene families

Sequence

CDS

Transcript

ENSAPQT00000033180

TACTGAGCTTTCCGAAGACGAAACAGCCAGAGATATCTTTGTATTAAAGTGTTTCACTCTCAATTCTGATTTggcagccattttgaattataaaatattgaagATTGAATTTCGAAGGACaccgaccaatcagaatgcagatTGAAGACCGACCAATCAAATGCAGATTGAAGACCGACCAATCACAATGCAGATTGCTGACCTGTTTCAAAAATAGGTGaattcagttttaattttgagatcagggACACAATTTCTTTTCGCACTCCCCCCGTTTTCTTAAAAACcacgttttcaaaatggcggaccaAGACTTGACTTCAAAAGTTGGTTGTTATTTAGACAGACATTTAGTGTTCCCTTTGATGGAATTTTTGTCCGTTAAGGAGgtATACGATGAAACAGAGGTGTTGCAGGGAATCCTTGAATTGCTTAACAACACAAAAATGGTGGATCTTGCTATGGATGTGTTCAAAAGGATCAACCCAGACGAAGAGATTCCGGAAGAACTAATTGAAAAACGGGCTGAAGTGGTGAAGGAATTAAAACAGTTAGAAGAGAAATCGGAACGTGTAATAAAGTTATTTCAAGATGAAGAATTTCTTGAAAAAGCACAAACTACCAGAGATGGAAAGCACTTATTTGATTATATACAGAAAGAAAAAGGAGTGGAATATGAAGCAGTTGAAAACCTCTATCATTATTCAAAGTTTCAATATGAGTGTGGCAATTATCAGAGTGCAGCTGATAATCTTTACTTCTATAGAGTGTTGGCAAATCATGCCGAACCAAAGACTGTTGATGCTCTCTGGGGAAAACTTGCATCAGAAATTTTAATGCAGAACTGGGATGCAGCTCTTACAGATTTGGATTTACTCAAAGAAGTTGTTGATCAAAATCATTATCCTGAACTTCAGCAACTTCAACTAAGAACATGGTTGATTCATTGGAGTCTTTTTGTCTACTTCAACCATCCCAAAGGACGAGATCTTTTGATTGATCTGTTTTTATACCAACCCAAATATCTCAACGCAATCCAAACGATGTGCCCGCATATCCTGCGATATCTTTCAACAGCCGTAATCACCACGTCGTGTAGTTCCACGAGACGTCGTGTTGTTATCAAAGATTTAGTAAAAGTGATCGAACAGGAGTCGTACACGTACAAAGATCCTATCACCGAGTTCCTACAATGTCTCTATGTTGACTTTGATTTCGATGGCGCTCAGAAAAAATTAAGAGAATGTGAAGCGGTGCTAAAAAATGATTTCTTCTTGTGTGGATGTATTGATGAATTTCAGGAGAATGCCCGTCTTTTCATTTTCGAAACTTTCTGTAGAATTCATCAATGTATCAGTCTTGGAATGTTGGCAGAGAAGTTAGATATGACCCCTGAGGATGCTGAGCGGTGGATCGTGAACTTGATTAGGAATGCCAGATTGGATGCCAAAATAGATTCTGAAAAGGGTCACGTGGTTATGGGTACGCAGGCCTCCTCGGTTTATCAGCAGGTCATGGAGAAGACGAAAGGACTTCTGTTTAAATGTCAAGTACTGGAACAAAATTAtgagaagaaaaagaaaactgGAACAAATGATAATTATACAGCAGCTAAAggtGGATGGAATACTTACGATACTTCATTCATGAAGAACTAAAATCTCTATATGCGACGAGAGTTTATTCTATATATGCCTagaaattgataataatatcTCAAGATactgaaaaataatataataatatcactGTTCATCACTTCTTCTGACTTAAGTCGGAAGTCTTAAGGCttctttccagttacgcgtttttttACGTAGctacgtgtacgcacgtaaaaattgaaattgattttaacgttagtttctatacaatcacatgaataaatgtaaagcatctcatactttgaatgatgtagtatgtgtttctaaaggtattttattaataaaatgaaatacagagggatttaaacttttacgtgcgtacacgtacgtgtaaaaacgcgtaactggaaaacacGTTTTCCATTCGGCGggcgattttttttcgcgcgaacaaacaGGAAATGAACGTGATTGGGTGgcgatgtcgtcagtgtttgtcgccagccaatcatgttgcttttttctctccacgtttttcgcgcgaacaaatttgcctagtggaaaacaggctttaatATAGCTAAGCAACTTCTGTAAAAGCACTACTTCATCACGATCCAAATAAATGACTTGGGTTCGCTTCTCGCTTCAGAATTCGTTGTTTCTTTTGTTGACTTAGACTTGGccaattttatttcatcaacagcAAGGGACAACGCACGTGCTCTTCAACCCACGCCATTATATTTCCATAgtttttgccttttttttgGGAAGCTAAGTCAAGGTTAATTATTCTAAACAGCCTATATTAAATATGAATAAGCGTCATCCGTGGATGTTCCTTTAAAAATGCACAGGTAGTTCATGCGCAGTTTTGTTCAAATTGTGTTTACGATTTAAAAACGTTGGTGACGACTtaacaatattttgatttaACAAAGCGTTGAGAATTTTTTGTGTGTGTATTCTGTCAGCATGTTGGACGTTGTAATTGCTGTCGTGGTTGTCGTTTTTGTTGGCATTTTGGCGTTTCTACAAGCTTATTTTATT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A7RWP6	Eukaryotic translation initiation factor 3 subunit E OS=Nematostella vectensis OX=45351 GN=v1g163572 PE=3 SV=1
Q6P7L9	Eukaryotic translation initiation factor 3 subunit E OS=Xenopus tropicalis OX=8364 GN=eif3e PE=2 SV=1
Q5ZLA5	Eukaryotic translation initiation factor 3 subunit E OS=Gallus gallus OX=9031 GN=EIF3E PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005382 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09440 all species →	eIF3_N	eIF3 subunit 6 N terminal domain	Domain	Interproscan
PF01399 all species →	PCI	PCI domain	Domain	Interproscan
PF21357 all species →	EIF3E_C	Eukaryotic translation initiation factor 3 subunit E, C-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016650 all species →	Family	Eukaryotic translation initiation factor 3 subunit E	Interproscan
IPR019010 all species →	Domain	Eukaryotic translation initiation factor 3 subunit E, N-terminal	Interproscan
IPR000717 all species →	Domain	Proteasome component (PCI) domain	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10317 all species →	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003743 all species →	Molecular Function	translation initiation factor activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005852 all species →	Cellular Component	eukaryotic translation initiation factor 3 complex	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006413 all species →	Biological Process	translational initiation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03250	EIF3E, INT6; translation initiation factor 3 subunit E	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.