Gene detail

Detailed information of ENSAPQP00000029817.1 in Leptogorgia sarmentosa

Genomic Location: chr4:14013914...14023903
NR annotation: XP_028401839.1, LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX3X-like [Dendronephthya gigantea]
Species Leptogorgia sarmentosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSAPQT00000033319

ATGAGTCATGGTGCCCCAGAAACTAACCAGAGTCTAGATCAGCAAtttgCTGGCCTAGACTTGAACACCGGAGGTCCGCAAGGCCGGGGCCCTGGTTCACAAAAGTCTTCACAAAACACTTACATCCCTCCTCATCTTCGTGGAGGAGGTGGAAGCAATCAGCGTTCTGCAGATTCAGGATATCAGGATAATTATGGTGGTAGAGGTGGAGGTAGAGGGTATTCCCGTTCTTCAAGTTACGAAAGAGGTGGAGGTTATGGCGGCAATAATTATGGTGGTTACTCTGGTAATAATTACAACAACTTCGGCGGCGGTGGCGGCGGCAATAGGAACAACTATGGCGGTGGATACGGTCGACGTGGCGGCGGTGGGGGTGGCTACAAAGACAGGAACTATGATTCGCCCAAAGaTCCTTGGATGTCTCTGCCTCCTGCGGAAGAGTGGGGCAAGTTGTTGCCAAGAAATGAACGGACGGAAAGAGAACTGTTTGCAGCGTGCAATACTGGTATCAACTTTGACAAGTACGAAGATATCCCTGTAGAAGCAACTGGCGAGAACTGCCCAGATCATATTGAGAATTTTGCTGATTGTACTGCTCTTGGAGAGGTCATCACGCACAATATTGGTCTGTGCCACTATTCAAAACCAACGCCAGTGCAGAAGTATGCTATTCCCATTATCAAGAATTCGCGAGATTTGATGGCTTGTGCCCAGACAGGTTCTGGCAAGACTGCTGCATTTCTCATTCCAATTCTGAGCAGAATATATGAAGAAGGACCACCTGCTCCACCAGAtATGAAACATCTTGGCAGAAGAAAGCAATTTCCAATTGGTCTCATTCTTGCACCCACTCGTGAACTTGCTATTCAGATCCTGGATGAGGCCAAAAAGTTCGCGTACAGATCCCACGTGCGTCCCGCGGTGGTGTATGGCGGAGCTGATGTCGGTCAACAAATGCGCGACTTGGATCGTGGCTGCCATCTTCTTGTTGCCACACCAGGACGTCTCGTGGACATGTTGGATCGTGGAAAAATCGGTCTCGATGTTTGCAAGTTTCTGGTGTTGGACGAGGCAGATCGTATGCTGGATATGGGATTTGAACCGCAGATCAGAAGGATTGTGGAACAGGATACAATGCCAAAAACTGGCGATCGACAAACGCTTATGTTTAGTGCCACATTCCCAAAGGAAATTCAGATACTTGCACGCGATTTCTTGAACAACTACATTTTCTTGGCCGTTGGACGTGTTGGTTCGACAAGTGAAAATATCACACAAAAGATTGTCTGGGTTGATGATGTTGACAAGAGGTCATTCCTGTTGGATTTACTCAATGCTTCAGGTCCAGAATCACTGACTTTGGTGTTCGTGGAAACAAAGAAAGGCGCAGATGCGTTGGAAGATTACCTGTATCGAGAGAAATACCCTGCAACATCCATTCACGGAGATCGCTCTCAACGAGAACGCGAAGAATCCTTGCATTCTTTCCGTAGTGGCAGGACTCCAATTCTTGTCGCCACTGCGGTCGCTGCTCGTGGCTTGGATATCCCCCATGTGAAGCACGTGATCAATTTTGATATGCCAAGTGATATTGAAGAGTATGTTCATCGTATTGGACGTACTGGTCGTGTGGGAAATACAGGTTTGGCCACTTCGTTCTTTAATGAGCGCAACCGAAATATCAGTAAAGTTCTTGTTCAAATATTAACCGAGGCTAAACAGGAGGTGCCTACTTGGTTGGAATCTATTGCTGGGGAATATCACAGCGGTGGATCTCGCAACAAGAATAACTACCGACGTTCTGGCAACAGTGCATTTGGTTCTCGTGATTACCGGCAACAAGGAAACCGTGGTGGAGGCGGTGGTGGTTACATGCAAGGTGGCGGTGGGGGTTATGGCCAAGGGTATGGTGCAGGTTACTCTGGTGGAAACTATGGTGGTGCACCGTACGGTGGAGGTGGTAACTATTACGGCGGTTATGGTGGCTATGCTCCGCGTGGTAACCCTAGCAACATGGGTGGTCGTTCCAATGACTGGTGGAATTAA

Transcript

ENSAPQT00000033319

ctcgttcccaggacgTGTTTTTCGGCCTGGCCACTCCAGCAAATGGAATGAGATCAGTGGAGATGGCGCATGTCAGAGCGGTGACGTCAGCGTTGCTCGAAGGCTCATCGTGAATATAAATTTCCACATTTCACTTGTTTAACAACGAGGAGAGACGatcgatatttttttctcacaATAATATCTCTACAGTTATGAGTCATGGTGCCCCAGAAACTAACCAGAGTCTAGATCAGCAAtttgCTGGCCTAGACTTGAACACCGGAGGTCCGCAAGGCCGGGGCCCTGGTTCACAAAAGTCTTCACAAAACACTTACATCCCTCCTCATCTTCGTGGAGGAGGTGGAAGCAATCAGCGTTCTGCAGATTCAGGATATCAGGATAATTATGGTGGTAGAGGTGGAGGTAGAGGGTATTCCCGTTCTTCAAGTTACGAAAGAGGTGGAGGTTATGGCGGCAATAATTATGGTGGTTACTCTGGTAATAATTACAACAACTTCGGCGGCGGTGGCGGCGGCAATAGGAACAACTATGGCGGTGGATACGGTCGACGTGGCGGCGGTGGGGGTGGCTACAAAGACAGGAACTATGATTCGCCCAAAGaTCCTTGGATGTCTCTGCCTCCTGCGGAAGAGTGGGGCAAGTTGTTGCCAAGAAATGAACGGACGGAAAGAGAACTGTTTGCAGCGTGCAATACTGGTATCAACTTTGACAAGTACGAAGATATCCCTGTAGAAGCAACTGGCGAGAACTGCCCAGATCATATTGAGAATTTTGCTGATTGTACTGCTCTTGGAGAGGTCATCACGCACAATATTGGTCTGTGCCACTATTCAAAACCAACGCCAGTGCAGAAGTATGCTATTCCCATTATCAAGAATTCGCGAGATTTGATGGCTTGTGCCCAGACAGGTTCTGGCAAGACTGCTGCATTTCTCATTCCAATTCTGAGCAGAATATATGAAGAAGGACCACCTGCTCCACCAGAtATGAAACATCTTGGCAGAAGAAAGCAATTTCCAATTGGTCTCATTCTTGCACCCACTCGTGAACTTGCTATTCAGATCCTGGATGAGGCCAAAAAGTTCGCGTACAGATCCCACGTGCGTCCCGCGGTGGTGTATGGCGGAGCTGATGTCGGTCAACAAATGCGCGACTTGGATCGTGGCTGCCATCTTCTTGTTGCCACACCAGGACGTCTCGTGGACATGTTGGATCGTGGAAAAATCGGTCTCGATGTTTGCAAGTTTCTGGTGTTGGACGAGGCAGATCGTATGCTGGATATGGGATTTGAACCGCAGATCAGAAGGATTGTGGAACAGGATACAATGCCAAAAACTGGCGATCGACAAACGCTTATGTTTAGTGCCACATTCCCAAAGGAAATTCAGATACTTGCACGCGATTTCTTGAACAACTACATTTTCTTGGCCGTTGGACGTGTTGGTTCGACAAGTGAAAATATCACACAAAAGATTGTCTGGGTTGATGATGTTGACAAGAGGTCATTCCTGTTGGATTTACTCAATGCTTCAGGTCCAGAATCACTGACTTTGGTGTTCGTGGAAACAAAGAAAGGCGCAGATGCGTTGGAAGATTACCTGTATCGAGAGAAATACCCTGCAACATCCATTCACGGAGATCGCTCTCAACGAGAACGCGAAGAATCCTTGCATTCTTTCCGTAGTGGCAGGACTCCAATTCTTGTCGCCACTGCGGTCGCTGCTCGTGGCTTGGATATCCCCCATGTGAAGCACGTGATCAATTTTGATATGCCAAGTGATATTGAAGAGTATGTTCATCGTATTGGACGTACTGGTCGTGTGGGAAATACAGGTTTGGCCACTTCGTTCTTTAATGAGCGCAACCGAAATATCAGTAAAGTTCTTGTTCAAATATTAACCGAGGCTAAACAGGAGGTGCCTACTTGGTTGGAATCTATTGCTGGGGAATATCACAGCGGTGGATCTCGCAACAAGAATAACTACCGACGTTCTGGCAACAGTGCATTTGGTTCTCGTGATTACCGGCAACAAGGAAACCGTGGTGGAGGCGGTGGTGGTTACATGCAAGGTGGCGGTGGGGGTTATGGCCAAGGGTATGGTGCAGGTTACTCTGGTGGAAACTATGGTGGTGCACCGTACGGTGGAGGTGGTAACTATTACGGCGGTTATGGTGGCTATGCTCCGCGTGGTAACCCTAGCAACATGGGTGGTCGTTCCAATGACTGGTGGAATTAACAAGTACTGTGTAACGTTTCATCTTTTGCATATTATTAATCAGTTTTACTTGGGTTATGTTCATGTCGTTTCGATCTTGGTAACTTACCTTATGTGAAGGGCTTCTGCTTGTTCAAGCGTTTAATAACTTCAGTGATAGtggaaaagagaaaaaaaaccGTTTCAGCGAATATTTTGGTGGTCAGTTCCGATCTGGTCACCATTAACATTGGAAACGCGCTTTGCGACCTTATCAGTTCGTCAGCTCCGcgctggaaaatattttgaaagtctTTTTTGTGGTACCGAAGAGCAAACTACCGTACATCAGAATGTGGAAAAAAGAGGAAATTTGAGACTCGTACTTTTGGAAGCTAAAAAAGTTTGATCAAATTTAAACACGTGAATAGCTTGGTGAAGAAAATCAAATCTAGAAGGGTATTGTATGGGATTCAAATGTGTTACTCGATATTGTTCTCTCACTCACTTCAGACATGCCTCGTTAGAGTTCTATTTTGTACATTAAATTTATCATTTCATTTCCCTTATTAAAATAAGCACCCGTTCAAACATTTTTCTCCTTACATTTATTGTTTTCGCTTACTTCAAACGCATCCTGTGATAGTTACACATGCATAAACTTTTTCgttgtgtttattttataaaaaaggCAAATAGCTATTATCATTGAGGATTTTGTATACGTATTTAAAATTGTTGGAAGAATGAGAAATACAGCAATTTATCTTTTCAGCCAAAACATTATTATATGTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q62167	ATP-dependent RNA helicase DDX3X OS=Mus musculus OX=10090 GN=Ddx3x PE=1 SV=3
P16381	Putative ATP-dependent RNA helicase Pl10 OS=Mus musculus OX=10090 GN=D1Pas1 PE=1 SV=1
O15523	ATP-dependent RNA helicase DDX3Y OS=Homo sapiens OX=9606 GN=DDX3Y PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000960 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00270 all species →	DEAD	DEAD/DEAH box helicase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000629 all species →	Conserved_site	ATP-dependent RNA helicase DEAD-box, conserved site	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR011545 all species →	Domain	DEAD/DEAH box helicase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47958 all species →	ATP-DEPENDENT RNA HELICASE DBP3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003724 all species →	Molecular Function	RNA helicase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0007276 all species →	Biological Process	gamete generation	Interproscan
GO:0030154 all species →	Biological Process	cell differentiation	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11594	DDX3X, bel; ATP-dependent RNA helicase DDX3X	EC:5.6.2.7	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.