Gene detail

Detailed information of ENSAPQP00000029853.1 in Leptogorgia sarmentosa

Genomic Location: chr4:13680310...13690190
NR annotation: XP_028401720.1, splicing factor, proline- and glutamine-rich-like [Dendronephthya gigantea]
Species Leptogorgia sarmentosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ENSAPQT00000033354

ATTCGAAGGCCTGGTCACATGGTTTGTGACATTCGGTCTGTTGTCTTGCTTGTGCACGAAGAGAAGGGCAGGAAATCTgctaaatttttattcaaaatgagTTCATCAAAGCCTAGAAATCGATCACGATCTCCGGTAAGGAGAAATAACGAACGTTCGCATCATTCGGGCCCGAATGATAAGCTTGAGCGGCGAAATAGTAAAGATAAAGGCCCAAAGCAACATGAAGAAAAAAGTCCAAGTATGGACGCCAAATCGAAGGTCCAAGTGAAACTCGAAAACCACGACAGTCGCAATAACAATGTCGACTcgaaagaaaataaatcaaGCAGCAATTCAAACTCGAGACAGTCTTACGTGAGCACAAGTAGCAGGACGTATGTGAATCCTGTGACGGGCAAAACGGAGcgaaaattttccaacagatgTCGTTTGTTTGTGGGAAATATCAGCGATATGAGCGAAGATGAATTCAAGAAGATGTTCGAAAAGTACGGAGAATATTCAGAAGCGTATGTGAATAAAGAAAAATCGTTCGGTTTTATCAAAATGGACACTCGGATGGCAGCAGAGGCAGCCAAAAATGCTTTAGATGGCTCCGTGCGAAAAGGCAGAAATTTAACTGTGAGATTTGCTACTTTATCTACTGCCATTCACGTTTCGAACCTTGGCCCCTTGGTTTGCAACGAAGTGTTGGAAAAGGCATTTTCTGCTTTTGGCGACGTGGAAAGAGCTGTTGTGGTTGTTGATGATCGAGGAAGAAGCAAAGGTTACGGGAGGGTGGAGTTTGCTCGCAAGGGAAATGCCATTAATGCATTGCAAAAAACAAGTGAAGGATTTTTTATGATTGGAAGATCGCCAAGACCTGTTTTTACTAAACAACAAGAGCAAACTGATGACGAAGAAGGTTTGCTCGAAAAGTCAATTGAACGCCAGGCAATGTATTACAGTGAGCGTGATGCGGGCGCTCGGTTCGCACCGACAGGTACGTTTGAGTACGAGTGGTGTCAGAAATGGAAACAGCTTGAAGATATGAAGAGAACACAACAAGAAGCGTtggaaaaacaatttaaagaaGCCGAAGATAAACTGGAAAATGATATGGTGCAAGCTGTTTCCGATTACGAGGCGGAAATTAACCGCAGAGAAATATTGGCAAAACAAGCTGAACTACAACGGCAAGAAGAAGTGATGCGACAAGAACTAATGAGACAACGTGCAATGGAGTTCAGGCGGCACGAGGAAGTACGAATGCAGGAAGAGTTACGAAGACAAGAAGAAATGCGAATGCAGGACGATTTGATGCGACGCCAACATGAAGAACTTATGCGACGGAGACAACATGAGGAGGCTGCTATGCTTCGTGGACCTCGAATGCCCCCTGGTCCTGCTTTTGGTCTTGGTCCACTTGGACCACCTGGATTTATGGGTCCTGGTATAAGTCCGGTTCACAACATGCATCCACCACGATTGCCCATGCCTCCGGTCGGAAGAGGGTTACCTGCTCCTCCTGGTGATTCGAGGCACCATGGAATGATGGGATACGATTTAAAGGGCGACCGTGTTCGTGACCGTAGGCCAATGGATCGGGGTGATCGTTCTCGTGCAGGCCCGCGGTATAATGACCATAAGTCACGTGATCGCTACTGAGGTTGCGAGATTTACCGGAACTGAATAATGCCTGCTTCACATCCACTGTGCTTGCTGCATACCATAAGATTGCCGCATACTTTTATGAATACTGATACTCGAACGTCGTTAATGTTTTTAACTAATTATGCGCGTGCTTAATAGATGAgtttttagtataaatttagtATATAAGCATTTGTGACTTGTAAATGATATGTAGGATCCTATGTAGCGCATATGTAGATAACTTTTGTCAACAGTTTGATGATGCAAATTGTTCTTAGTTAAGTTGTGATAAAAAGGTACCAACAATTCTTGGAATTTTATGTTGATATAGCGCTATTTGTATCAGTGGATTGCGCCGTAATGTAGAAGTTATAAACGATATTTCTTATTATTACAGTATCGCTGGCTTTTGATGCTTTTGATGATCTATATTTTCCGAACCGAACAAAGTATACCGTACAGATtgttgaatttaatttttagtaaaattgaGTGACTGTAAGAATATTTGTTGAGTTCTTTAATGTTCAGAGATATAGCTGTAGTAAAGTTAATAAGCATAAAGCATGATTGGGCAAAAAAtgttgtgttgttttgatatATCTGTCaattactttaaaaaaaaactaagAGATTAGATGTAATGAAATGACCATTGAGAAGTGAAATTAATAAGTGTTAAAGTAATTTTAAgcggaaaagaaaaaaatttatatatttatgacGTGCAGCACTTATGTTTGTTGTAGAAAGGTCACACACGTTATGATTATAcaaaatgtgtaacaatatcTCCCAGTTGTCACCATAGTATAGTGGCTTTATGGCAACTCCTGAACTTTGGGCACAGTATCAGTATGTACCAGGACACATAGAAGGATTGCATTGTGGAGTTACCAGAGTGCTCGACCCACAATAATGAATTTATTTAACGTCTTACCGACCTTCCACCCAATTCAAAAGAGTGCTCCAACTGCACGAGCAGTGagcaaaatatacaaagtGCACAAC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8VIJ6	Splicing factor, proline- and glutamine-rich OS=Mus musculus OX=10090 GN=Sfpq PE=1 SV=1
P23246	Splicing factor, proline- and glutamine-rich OS=Homo sapiens OX=9606 GN=SFPQ PE=1 SV=2
Q5ZK88	Paraspeckle component 1 OS=Gallus gallus OX=9031 GN=PSPC1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003464 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08075 all species →	NOPS	NOPS (NUC059) domain	Domain	Interproscan
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012975 all species →	Domain	NOPS	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23189 all species →	RNA RECOGNITION MOTIF-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13219	SFPQ, PSF; splicing factor, proline- and glutamine-rich	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.