Gene detail

Detailed information of ENSAPQP00000029920.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: CAB3976715.1, Ribonucleases P MRP subunit POP1 [Paramuricea clavata]
Species abbreviation LSARM · all data for this species · gene families

Sequence

CDS

ENSAPQT00000033425

atggcggaattTCCGCAAGGAAAGAATcgtaaaagaaaacattttgaaatggaGAAACCTCGGCAATCTCCATTTCAAAATCCTAGAAATGCTGGCGTACCTGTTGGGATTGTGTCCAAAGCGCCTCGCGGTATTAATGCCGCGGAATTTGCCGAGTCGAGAGCTATGGAAATTCACAATATGATGCACGCTCTGTCGTCTGCGGCAAATCAAACTAATAAGCGAGTGTTTCAGTCATTACCTCGACATATGAGGCGACGAGCTGCGAGTCATAACCCAAAACGAATGCCGGTTAGACTTAGAGACGCATATAATAGGGAGGCTTCAAAGACCCAGGAGAAACAGAAAGAAACTTCAAAGCAAAAGAAATCTCGTAGGCATCGTAGGAAACACAGCAACCTACTTGCAGAATACAGTCGACGACAAAGAAAACATGCATGGCTAGAAACACATATATGGCATGCAAAAAGATTTAAGATGGTTGAACAATGGGGTTACAAGATACCATTGCATCCTAATGATAAAAGTGTAAGGGCTTCATATAGAGCCATGGTTAATGACTGCCTTTTACAGGATGTATCATATTATCAGTGCATTGAAATTTATGGTAGACAAGAAATGATGGTTGCAGCACTAAAGCACTTAACAAGTTCTGATGTTGGTCCAACAATGGCTGCCAAGGATTATTTAGATGGTCGACATGAAGGTCATACGGTATTGTACAGATATGACCAATGTCCAAACCATGCAATTGGACCTGTTAAGTTTCTATGGCAATCACGTCTGGAGGTGGACAATACTTCCATGAGAAGACTTTGGCTGTGGTCACATCCCATGTGCTCAGATGAAGTTGTCAAAGAAATAGTGCATGCTTGCTCACTTGAGGGATCAACTAAATATGTAGAATCAAAATCATGGCTAGAAAATAAAGTCACAGAAAACACTGAACCCTTGGGTGTATCTGGGAGTACATTTGAATTTATAGTCACAGTTCTTCATGAGCAAGTGGTGAGGCTGCGTCTTACTGGACCTAAATCCCATGCGCTGCTGGCTTCCACGTTACAGTTGTGTGACTGGAATAGAGAAAGGGATCGCGCTGGATCTCGATGGTGGGAGGTGTACAGCGATGGTGAAGACAGGATACAGATGTTGGAAGATCAAAACAAGTCCTGGGAACAAATGAAGGGCGTGGCTTCTGCAGGAGTGTTGAAAGCAGGTTCTGTTCTGGCATTAGTAGTGAAAGATCCAAGACTGGGGTTGCCAGTTAGGAAGTCCAGTGTTGACATGGCATCTGAAGATATCTATAAAGatGCAAGCACCGAGGAATCAACGCTGACTAGTATCTCTGAAAGTTCAGTTGTTTCTCCTTTGTGGAACAGCGTAGTACGAAAAGAAGTGAAACAAACGAAGATGCCTGAGAAAGAGTTGAATAATCTTCGTTCAAACCAAGCCATGCCTGGCTCCAACCTTGATCTAGGTGACAAAACGTCGAGAATCCCAATATTAGTTATTCAGCAGCCAGGTAATTCAGGTAACTATCAGATGGGATCGATCAACTTTGGCAGTGGCTATGacgtcatcttgcccgctggTTGGAGCATGGCCTTTTGGATTGCGTTCGTGTATCGTGGTGCACGTGTTGGTGGAACACGGGAGTTAGAAACGTGCTCACGCGAACAAGGCGTGCCGTATTTTCCTCGTGACTTCCCAGACACTGAAGCCAGCCGTGAGTACAATGAAGAGCAGAAAAGGCTTGGGGAGGAGAAGTACAAGCGATACCCCCCTGCTAAGCGACCAAACTATCAGAAGTTTGGCATTGCTAGTCCTTATGGCCCAGACTGGGGCGGACTTGTGAATGAATGGAGCAGCCAGGTTGACAGCTTAGAAAATGATACGAGAAAAGTAGTGGACATTGAGGTGGTTAAAGATAGTGAAGCAAGAGAAATACAGAGCGTAGTAGCAGACTTAGTAGCACTAATTGTCAACATTGACAATGCTGAAAATATATCAGCGGAAGATTGTCTGAATACATCTGACATACATGACGGTAGTTTAAAGAATAATGGGCTTCAAAGTGTTGTTGACTCTGAAATTCCATCGAATGATATTGAAGATCCCAATAATGTCTGCGAAGATGCTGGTAGCAGTGTTCCAGAAATACAGAGCTTAGTAGAAGACTTAGTAGCAGCAACTGTCAACACTGACAATGCTGAAAATATATCAGCGGAAGATTGTCTGAATACATCTGAAATACATGACGGTAGTTTAAAGAATAATGGGCTTCAAAGTGTTGTTGACTCTAACATTCCATCGAATGATATTGAAGATCCCGATAATGTCTGCGAGGATGCTGGTAGCAGTGTCCCAGTTGTTGGTGATTCTGAAACAACAGACACTCAGTTCAATGTCATACGAAAATTATCCACTCTCAGACGACTTCAGAATATTACACTTAGTTTTCAACATACTGCAAAGAATAAGCCACACAAGCACAAGATTCCGAATGAAGATATTATTGAATATCTTTCAAAGACTATCACTGTGCATCGCCGTTCCCTGGTTTGTCTCAACTTGCGTCCGTTATCAAAAGGCTGCCCGGAGAATAATGCAGTCATTTACATCCCAACGTCTCAAGATTTAATAGAGTTACAGAAAAACAAATCTTACGCGGGGCCGGCCGAACACGTGCACAAATGTAACAACATCTCGTCTGTGATTGGTCAATGTTCAAGGAAGGCTATTGGTTGGGTGACGTCGGGCCAGTACTCATTCGCACGTGGTCAAGGATCGGGAATTGGGTTCTGTACTTTTCCCGGTTTCTGTGAACTGATCACGAGGACTTTAAAACAGAACTGTAGTCCAGTTGTTTTAGTAAGGAATACTAGTACTTTTCAGTATCGCTTTGCTAGCGTTATCGTTGTGTGA

Transcript

ENSAPQT00000033425

ACACGTAAATAAATCACAGACTTCAAGGACTCACCGATGCAGTGTGCTTTGCTTTTGGCTTCACAATATGGTTTGCAGCCATTTTTGTGATAAAATTGAACATATAAACCACTAacaaataaatacaaaataaatccAGTCTTGGATTTCAACCAGAAACTGAATCTTGAGCCACAATTTTAGGttgaaattcaatattttaaaattttaataggaaagaaaataaaacaatacttTCCAGTTTTTTTCAGCGCGGGTCCTGGGGCGAGCGCGCAAACGTTCGATTCGTTcgattcaagatggcggaattTCCGCAAGGAAAGAATcgtaaaagaaaacattttgaaatggaGAAACCTCGGCAATCTCCATTTCAAAATCCTAGAAATGCTGGCGTACCTGTTGGGATTGTGTCCAAAGCGCCTCGCGGTATTAATGCCGCGGAATTTGCCGAGTCGAGAGCTATGGAAATTCACAATATGATGCACGCTCTGTCGTCTGCGGCAAATCAAACTAATAAGCGAGTGTTTCAGTCATTACCTCGACATATGAGGCGACGAGCTGCGAGTCATAACCCAAAACGAATGCCGGTTAGACTTAGAGACGCATATAATAGGGAGGCTTCAAAGACCCAGGAGAAACAGAAAGAAACTTCAAAGCAAAAGAAATCTCGTAGGCATCGTAGGAAACACAGCAACCTACTTGCAGAATACAGTCGACGACAAAGAAAACATGCATGGCTAGAAACACATATATGGCATGCAAAAAGATTTAAGATGGTTGAACAATGGGGTTACAAGATACCATTGCATCCTAATGATAAAAGTGTAAGGGCTTCATATAGAGCCATGGTTAATGACTGCCTTTTACAGGATGTATCATATTATCAGTGCATTGAAATTTATGGTAGACAAGAAATGATGGTTGCAGCACTAAAGCACTTAACAAGTTCTGATGTTGGTCCAACAATGGCTGCCAAGGATTATTTAGATGGTCGACATGAAGGTCATACGGTATTGTACAGATATGACCAATGTCCAAACCATGCAATTGGACCTGTTAAGTTTCTATGGCAATCACGTCTGGAGGTGGACAATACTTCCATGAGAAGACTTTGGCTGTGGTCACATCCCATGTGCTCAGATGAAGTTGTCAAAGAAATAGTGCATGCTTGCTCACTTGAGGGATCAACTAAATATGTAGAATCAAAATCATGGCTAGAAAATAAAGTCACAGAAAACACTGAACCCTTGGGTGTATCTGGGAGTACATTTGAATTTATAGTCACAGTTCTTCATGAGCAAGTGGTGAGGCTGCGTCTTACTGGACCTAAATCCCATGCGCTGCTGGCTTCCACGTTACAGTTGTGTGACTGGAATAGAGAAAGGGATCGCGCTGGATCTCGATGGTGGGAGGTGTACAGCGATGGTGAAGACAGGATACAGATGTTGGAAGATCAAAACAAGTCCTGGGAACAAATGAAGGGCGTGGCTTCTGCAGGAGTGTTGAAAGCAGGTTCTGTTCTGGCATTAGTAGTGAAAGATCCAAGACTGGGGTTGCCAGTTAGGAAGTCCAGTGTTGACATGGCATCTGAAGATATCTATAAAGatGCAAGCACCGAGGAATCAACGCTGACTAGTATCTCTGAAAGTTCAGTTGTTTCTCCTTTGTGGAACAGCGTAGTACGAAAAGAAGTGAAACAAACGAAGATGCCTGAGAAAGAGTTGAATAATCTTCGTTCAAACCAAGCCATGCCTGGCTCCAACCTTGATCTAGGTGACAAAACGTCGAGAATCCCAATATTAGTTATTCAGCAGCCAGGTAATTCAGGTAACTATCAGATGGGATCGATCAACTTTGGCAGTGGCTATGacgtcatcttgcccgctggTTGGAGCATGGCCTTTTGGATTGCGTTCGTGTATCGTGGTGCACGTGTTGGTGGAACACGGGAGTTAGAAACGTGCTCACGCGAACAAGGCGTGCCGTATTTTCCTCGTGACTTCCCAGACACTGAAGCCAGCCGTGAGTACAATGAAGAGCAGAAAAGGCTTGGGGAGGAGAAGTACAAGCGATACCCCCCTGCTAAGCGACCAAACTATCAGAAGTTTGGCATTGCTAGTCCTTATGGCCCAGACTGGGGCGGACTTGTGAATGAATGGAGCAGCCAGGTTGACAGCTTAGAAAATGATACGAGAAAAGTAGTGGACATTGAGGTGGTTAAAGATAGTGAAGCAAGAGAAATACAGAGCGTAGTAGCAGACTTAGTAGCACTAATTGTCAACATTGACAATGCTGAAAATATATCAGCGGAAGATTGTCTGAATACATCTGACATACATGACGGTAGTTTAAAGAATAATGGGCTTCAAAGTGTTGTTGACTCTGAAATTCCATCGAATGATATTGAAGATCCCAATAATGTCTGCGAAGATGCTGGTAGCAGTGTTCCAGAAATACAGAGCTTAGTAGAAGACTTAGTAGCAGCAACTGTCAACACTGACAATGCTGAAAATATATCAGCGGAAGATTGTCTGAATACATCTGAAATACATGACGGTAGTTTAAAGAATAATGGGCTTCAAAGTGTTGTTGACTCTAACATTCCATCGAATGATATTGAAGATCCCGATAATGTCTGCGAGGATGCTGGTAGCAGTGTCCCAGTTGTTGGTGATTCTGAAACAACAGACACTCAGTTCAATGTCATACGAAAATTATCCACTCTCAGACGACTTCAGAATATTACACTTAGTTTTCAACATACTGCAAAGAATAAGCCACACAAGCACAAGATTCCGAATGAAGATATTATTGAATATCTTTCAAAGACTATCACTGTGCATCGCCGTTCCCTGGTTTGTCTCAACTTGCGTCCGTTATCAAAAGGCTGCCCGGAGAATAATGCAGTCATTTACATCCCAACGTCTCAAGATTTAATAGAGTTACAGAAAAACAAATCTTACGCGGGGCCGGCCGAACACGTGCACAAATGTAACAACATCTCGTCTGTGATTGGTCAATGTTCAAGGAAGGCTATTGGTTGGGTGACGTCGGGCCAGTACTCATTCGCACGTGGTCAAGGATCGGGAATTGGGTTCTGTACTTTTCCCGGTTTCTGTGAACTGATCACGAGGACTTTAAAACAGAACTGTAGTCCAGTTGTTTTAGTAAGGAATACTAGTACTTTTCAGTATCGCTTTGCTAGCGTTATCGTTGTGTGAACTTTATTGCGAGTGTTGAGtttgtatttgaaaaattgagcTTCATTAAAACttccaaaaaaatatattgcaattcattttctattcgttttacttatatatattgtaattcATCTCGCACAAATGTGTAAACGGATGAATGGACGTTAACGAAACGCGTTAACGAGGGATGTAGCAGGTGCACTTAGATATCCAAAATTTCCATAAGAAAGAGCCGTCCAATCCCACTACGATccaatgaatatttaattaccTAAGCATTTTCGAGATAAAAGCCAATAACTCATCTACAACAACACAAAGTCATAGAGAGCAAGATGTTTCTTCGAATCGAAGCTTTCGTATTTCTGACGTTCTTTCTAGCAAAGTCCGTATACACAAGAGAAAAAAGATCTGAGTTTTGTCTTCCCGGAGACAACTCTATCCATCAGTTTATTGATAAAGACCTTAAAGGAAGAACCGT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q99575	Ribonucleases P/MRP protein subunit POP1 OS=Homo sapiens OX=9606 GN=POP1 PE=1 SV=2
F4IL30	Ribonucleases P/MRP protein subunit POP1 OS=Arabidopsis thaliana OX=3702 GN=POP1 PE=1 SV=1
Q9UTA4	Ribonucleases P/MRP protein subunit pop1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=pop1 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005379 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08170 all species →	POPLD	POPLD (NUC188) domain	Domain	Interproscan
PF06978 all species →	POP1_N	Ribonucleases P/MRP protein subunit POP1, N-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027266 all species →	Homologous_superfamily	GTP-binding protein TrmE/Aminomethyltransferase GcvT, domain 1	Interproscan
IPR039182 all species →	Family	Ribonucleases P/MRP protein subunit Pop1	Interproscan
IPR012590 all species →	Domain	POPLD domain	Interproscan
IPR009723 all species →	Domain	Pop1, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22731 all species →	RIBONUCLEASES P/MRP PROTEIN SUBUNIT POP1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000172 all species →	Cellular Component	ribonuclease MRP complex	Interproscan
GO:0001682 all species →	Biological Process	tRNA 5'-leader removal	Interproscan
GO:0005655 all species →	Cellular Component	nucleolar ribonuclease P complex	Interproscan
GO:0008033 all species →	Biological Process	tRNA processing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSAPQP00000029920.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.