Gene detail

Detailed information of ENSAPQP00000029988.1 in Leptogorgia sarmentosa

Genomic Location: chr6:7061377...7064204
NR annotation: CAB3981815.1, Hypothetical predicted protein [Paramuricea clavata]
Species Leptogorgia sarmentosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ENSAPQT00000033493

ATATTCACATCAGTGTTGGATACATAACATGCCCTTTATTTTAGACACAATGTGCACCCTAAGTTGTTGTCATGTTATTAACTCGCCATTAGGACTAACAGTCTACAGACCTTGTTCGATAACACACTCTAACCTTCGATATAACAAAGTGTTGAATACTATTTTGCAATTCATTCACTGTATGAGGGTCGATTTTCCAAGTGATAGTGCTAATTATCATGATGTACTGCATAATGTCATGATGATATATCTACTATACCAGGGTATCGGACTGTAATACTAAGAAATGGTATCACATAATGTGCCTCATTTCTAGGTTTGTTTCGTGTTGTATTCACAGGAAGATTAACCGTGGTTCAACAATGTCTTACACCGGGGGAGAGTATACCCCTAACACTCATAGTGGAGCACCGAACAATCAATTTGCAACAACTTACACACCAGCAAACCAGTCACAGAGCCAGTATGGCATACCACCATACAACCCATATACTGCACCTTACCAACAAAATACAACTCAGTACCCATATAATGGCCAAGGTGGAACATCATATGATCAAAGTGGTCCATATGGGCAGGATACCAATTTTCCACCAGTAGAGCAGTACTCAATTACTGCCCCATCTGATAATTCAACCAGTGCCATTACAAATACACCTTCATATAATCAAGCACCCCCACCTTCATATAATCAATCACCCCCACCTTTATTTACTCAGGCACCCCCACCTCCATATAATCAGGCACCTCCACCTTCATTCAATCAGCCAACCCCACCTTTATTCAATCAGGCACCCCCACCTTCATTTAACCAAACACCCCCACCTCATGAAGGACCATCCTACTTTCAAGGGCCTGCCTATTCACAAAGTGTGGGCTATCCACAACAAGGTATTACCTATCCCCAACAGTACCCCTCCTATGGACAGCAAGGCCAATCCTACACACCAGGGACAGAACCTTACTCTAAGGGCGAAAATTCGAACTCAAAAACTTATGGACCTATAATTGGTCCCCAGAAACCTCCCAAACGGCCCCACATGCCTCCCAAACTGCAAACAAGTTTCAAACAAGCTAAAAAGACTGTGGCCCAACCGCCACAACCGATCACCTCCATGCAACCACTTCAAGGCGGGAGGTCAGCGGTCAGCGCAGTACACGACCTGGGCCGTCAAAACGGATGGACGGTTAATTGGTTTGAAGAATCTGAGACAGGCCCACCTCATGCTAAGGTTTTTTCCATGAAGGTTACAATGGGACCCTATGAGGTGAGCGGCAGTGGGCGatcaaaaaaaattgcaaaacagGACGCAGCCCAAATACTTGTGGCGCAAGTTTCGGGAAACGAAGTGGCAGACATAATGGGACTACCAGGTTTTTCTGGAAATGCCGGTCAAACCGGTCAGTCTGGAAGTACCTCGGAAGAGTATGGACCACAGCTGCCGCAAGCCGCTGGTCAGAAGACCGTAAATTCGGCAGGGCCATCTGGGGGGGATAATCCCATATCTACGCTCGATCATATTGTCAAGAAACATAAAATGGGTGAACCACAGTATATCAGCGTCAGTGAGAATGGACCGTTAGCTTTACAGAGGTTTGATATTAAAGTGAGAGTAGGCGATAAGGAAGCCTCGGGACTGGGCCGGTCTAAGAAAGTGGCAAAGCGCAACGCAGCGCAAGCCATGTTGGACCAACTGTCGAGAACACAAACCGGTATACAACCGCCGACAAAAAGAATCATGTTTGTGAAAGCATCGAGTGAGACTGCAACGACAACTGGTTTTTCTAACAGCGCGAATTACTGACCTTCAATCTAGAATACACTAGATTGCTTTTTGAACGACGGCGTGACAAATGTAGTGGAGTGTTGTTTTTCTGATTGTCTGCCAGGCTGTTGTAGAAGTATAGAATAAAAACAGCCGTGACACTGATTGgccatgtttttaaaaaaggcCATTATGAGAGTGTTCTTATTTTCTCGTCCTATGCTATTTTAAAAACGACAAGTTTTCGTCTGTTTAATTTTCCACAGTGATTAAAAAATTTCTGTGATTGACTTGCTGGGCTCAGTTCTTTTAAGTTTAAAAACTCTTCATGCAGCATTTAACTTCAAATTTTAGGCTACATCCAAAAATAAATCCCGGCTTTCGTTCTTTTTATATTCCCTGCAGTAAGCTCTAATGACTTTGATACGGAGTTTAGAATAAAACCGTCAGACATTGTCAATCAAGCTGAGCCATTCCATAAACAAAAGGGCTATGACGTTAGCTACATATGTTATAAATGAAGTTTTGCCGGAGATTTGACAATGTATCAGATCTCAAGAACCTGTATTTCGCAGAACCTACACATGATGGTTAAAACTATAAAACCGTGCTATAGAATTGTGGCTGTTCCACgcttataaaaataatatattgacTCTATTTTGGGACGCTTCGTTGTGTTTTGTTTTAGACATAAATATTTGGCTAATTCTTGGCAAACAGGACTTTGTAGCTCACTATGCATGACCGTCGTCAAAATTTAGATTAGTAAATCTATTCtctcaaaatatattttttcattatttttcacacaaaactttttcattttttctcgagTTAAAGTGGAGTAGCAAATGACTCCTTGTTTTCCGTTAAAGCTCTGGGCTCGTGAAGGAACACCGCAAACTCCACACCcttaaaaagaaaacaatagatTTTAGCTGACCACGGACTTCATCCGGGTGTGATTTGCAATGACACTAGAGCTACAAAGACCCGTAGCCATAAAAGGCTAGCTTGACcgaattgaaatttaaa

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7ZW47	Double-stranded RNA-binding protein Staufen homolog 2 OS=Danio rerio OX=7955 GN=stau2 PE=2 SV=2
Q8CJ67	Double-stranded RNA-binding protein Staufen homolog 2 OS=Mus musculus OX=10090 GN=Stau2 PE=1 SV=1
Q68SB1	Double-stranded RNA-binding protein Staufen homolog 2 OS=Rattus norvegicus OX=10116 GN=Stau2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002781 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00035 all species →	dsrm	Double-stranded RNA binding motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014720 all species →	Domain	Double-stranded RNA-binding domain	Interproscan
IPR051740 all species →	Family	Double-stranded RNA-binding domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46054 all species →	MATERNAL EFFECT PROTEIN STAUFEN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003725 all species →	Molecular Function	double-stranded RNA binding	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007281 all species →	Biological Process	germ cell development	Interproscan
GO:0008298 all species →	Biological Process	intracellular mRNA localization	Interproscan
GO:0010494 all species →	Cellular Component	cytoplasmic stress granule	Interproscan
GO:0035418 all species →	Biological Process	protein localization to synapse	Interproscan
GO:0043005 all species →	Cellular Component	neuron projection	Interproscan
GO:0043025 all species →	Cellular Component	neuronal cell body	Interproscan
GO:0098964 all species →	Biological Process	anterograde dendritic transport of messenger ribonucleoprotein complex	Interproscan
GO:1990124 all species →	Cellular Component	obsolete messenger ribonucleoprotein complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSAPQP00000029988.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.