Gene detail

Detailed information of ENSAPQP00000030821.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: XP_028393942.1, apoptotic protease-activating factor 1-like [Dendronephthya gigantea]
Species abbreviation LSARM · all data for this species · gene families

Sequence

CDS

ENSAPQT00000034448

ATGATAGAGGCGCATAGACATTTGCTGATTCAAAACAGAAAAGCGATTGTCCAGGATTTGCTTGTGGACGATTTGCtgtctgaactacgaagcaagtTCATTATCGATCAGGATGACTCCGAACTGATAGAATCAGAACGAACCAGCCAGCGAAAGGCGGAAAAGCTTTTAGATTTGTTGCCCGACAAAGGGTATAACGCATTCATTGCTTTTTATGAGAGCCTGGTTGATAAGTATGAGCATTTGGCTAAGTTACTGGAGAGTGGATTGAGTGAAAATGATGATGGGGCAAATTGTGGAGGGCATTCGGTGAACAACAATTTAGCAGGTGAAGGTCCAATGACTGCAGCTCACAGAGAATTACTCACATCAAACAGAGTAGCCATTGTTGAAGACCTTCTTGTTGACGATGTCCTGGCCCAGctcttttcaaagtttgtCTTCGACAACAACGATAAGGAATTGATACGTTCAGAAAAAACTTCAAAGCGGCAGGCGGAAAAGCTTCTTGATCTCCTGGTAAAAAAAGGAGATGAAGCTTTTGGTCATTTTTTATCAGCTCTGACAGATCCTTATCCTCATCTTGCCGAACTGTTGCAAGCAGGTCATTCAGGAAAATCAAGATTACCTTCGTATGAAACTCTTCATTTTGTAGTGGATTCGAAATTGATCGAGGGAGGCGTACCCAACCAGCCTCAGGTCTTTACACGGCGACCGCATGAACGAGACAAGCTGCGCTCAGCATTGCGTTCTTTAAAAAACCGCGATGCATGGGTGGTAGTTCATGGCATGGCCGGCTGTGGCAAAACTATCCTTGCTGCAGATGCACTGCGCAGTGCCGCGTTACTCAATGAAACCTTCCCTGGAGGAGTGGTGTGGGTGCAAATCGGCCCTGTGGATCGTCAGAAACTGCTGATGAAAATGCAGAATCTGTGTAAACGTTTGGATAAAGATAAACACAGACCGGAACCGCGCAACCTTGAAGAGGCTCGGGAGCGTCTTCAGAGTCTCTTCACCTACCAACACCCGCGTAAGCTGCTCGTTCTGAATGATCTTTGGAGTGCGCACGACGCGCGCTTCTTCGATGTCCGAGCACGTGTGTTGGTCACCACCCGCGACGTCAGCATCGCTGATGGCATTGAGGTGATAAGATGCCCAGTTAGCGTAGCAGAGAAATTAAGCTCTTCACAATGTCGGGACATTTTCGCACAATGGACGAGAAAGAGAGTGACAGAATTGCCAACAGAGGCGGGCGACATCATAAAAGAATGTAATGGACATCCTTTGGTCATCAGCACAATCGGAGCGCTGCTGCGGGACCATCCTAACCGATGGACGTATTACTCGATGCAGTTGAAACATCACAAGCTAAAGAAGTTGAAAAATACTAGTTTTGCATATGAATACCCAGACCTCAACCAAGCTATTGGCATGAGTATTGAGAATTTGGAGAAGAGTTTGGAGGacaaattttttgattttgttatatttGAGTCGTCCATCAAAGTTCCCAAGTCAGTATTTGGCTTGCTTTGGGGTATGGAGGACACTTTTGAAGTAGAAGACATTCTGGAAGATTTGGTGAATAAGTCATTGGTGAAGTCGACAAAGTGCCCAGGTTCTGCCGGACCTATCAGTTATGCCATACACAACTTGCAACTGAACTACATGTTGGAAAATTGTGATGATATTGAGGCTCGTCATAAAAGACTGGTTGATTGCTACAAGAAGACGTGTGATAAAGGTACTGTGGTTCTGGATGACGATGGCTATGTCTTTTGGAATCTTGTCCACCATATGCTTGAGGCAAATCAACAAGGGGAAGCAATGCAGCTTCTCACGAACCTTGCTTGGGTTACAAAAAAGCTTGAAGTGTGTGGACCTGCTGACATCATCAACgattatattaaaattaatgaacTTGTCCAGAAGAAGGAGTTTAAGAACCTGAACGATTTCTATAATTTTGTGAGAGTTGAAATGTTCGCGAGTCTTCCCATTCCTGACGTGATTCAGACTGCATTGAGCGAAGCCGCAGGCAACGACGAAGTTTACAAGCAAGCAAAAGAAGAGGCGTTGAAAAGATCAAAAGAGGGGAAACTTTACGTAGATTGGTGTAACAAGCAAAGCGAAAACGTCCAATCTCTTGAAATGACTGTGAAACCTCACAATGGTCCCATTCATTGTTGTGTCTTCTCGTCAGATGGTAAAACTATTCTCTCCTCATCCTCCGATAAAACTGCCAAGGTCTGGGAAGCGATGACTGGCAAGGTGCTTCATACTCTTGAGGATCATGACGATACTGTCATTTGCTGTGCTTTCAACAACGACAATACCAAGGTCTTGACCACATCCCATGACAAAACTGTGAAGGTATACCACCATCTGATGTTTCCATTGTTCCTAATTTTTTTCCTAGTGGGTTTTAGTGAGCTTTATCTCACGTACAAAGATCACAAACTGGACGTACACTGTGCGGCATTTTCACCGGATGAGAAAAAGGTTGTTTCTTGTTCTGCTGATAACACGATCAGGGTTTGGGATAGTGAGACAGGAAAAACGGTTGCTGTACTTACGAATGATTTTCATACGAAAGTTCGATGGTGTTGTTTTTCTTCTGATGGTCAGAAAATTGCTTCCGGATCTGACGACGAAACTGTCAAGGTTAGTATTTTAAAGTTTACAAAGAGTACGCATAATCTCTTGCAGCTTTGGAACATTGATACCAAAACGCAGATTAATGTGTATGACCGACACAGAGGTTGGGTTCACACTGTGGCCTTTTCTCCTGACGGCACTCAACTGGTTAGCGGTTCCGCTGATGCAACTATCAAGGTGTGGCCTGTTGATACCACAGCCTTCAAGCAAAGAGTTAAACTGAAAAAGGTGTttgacgtttactttgaagaAAATCAGCCATTAATTGCCGTAGCAGACAGTCACAACAGAATAAAGATTTTGGAAGGACTTCAAGGAACAGAACTGCGCTGTAGCGAAGCCCACGATGGCAAAATCACttgcattttattttcattggaTGGGGACAAGATTGCGATTGGCTTACTGTCTGGACTAATCAAGTCATCCAGTTATGATGAAGATTCATTTCTATGCTCAGGTGCCCTGTTATTGTCCTGCTCTAAAGATGGAACATTTATGGTAAATACCTTTAAGCCATCTTTATTGTACAATGGTAAAGTTATAGCATTTCATGCATCTTTACGTTTTCTTCAGATGTGGGACACCGACTCAGGTGAGTCTTTGCATGGTAAAGAAAAAAGGCACGACAATGAAGTGACTGTAGCGTCGTTCTTTGATGATGATAAACGTATTGTGACGGCGTCCAAAGATGCAATTGCCTGCTTCTTCATGTGTCCCATGCTACTTCAGGGAAAGCTAAACTTAATTATGGACAATGCAATTTCCTCACTTATAAACTTGGCCAACTGCTGCTATAATCATTCTCTCTGTGTTGAGGTGTGGGACAGTAAATCCGGAAAACTTTTGTTCACGTGTGAGCACCAACAGAACGAGTGGGTGTCAACTTGTGTTGTTTCACCAGACAATAAAAACCTTGTAACTGGCTCCGCTAATGCATCAGTAAAGGCATGGAATTCTTTAACTGGGCAAGAACTATTCAACATATCCCCTCACAAAGATGTCGTGAGATCTTTAGCTATCAACGAAGACAACTCAATATTTGCAAGCGGAAGTGACGATGGAACGGTTCGATCGTTCTGTACTCCGCATACGGGAGCCTGGGTGACTGATATTGTTTTTTCAAAAGATTGTAAACGGTTGGTCACAGTCGGTAATAACATACAGTGGCATGACATAGATGGCAAACTGCTTCAACAGTTCTTCGTAAAAGGAAGTCATTTACGTCGGACCAAATGCTCACCAGATTTTCAAACCTTTGTTACAGTAGATAACATAGGAGTTTTATACATACTCAAGGTGATTGCGTAA

Transcript

ENSAPQT00000034448

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O14727	Apoptotic protease-activating factor 1 OS=Homo sapiens OX=9606 GN=APAF1 PE=1 SV=2
Q9EPV5	Apoptotic protease-activating factor 1 OS=Rattus norvegicus OX=10116 GN=Apaf1 PE=1 SV=1
O88879	Apoptotic protease-activating factor 1 OS=Mus musculus OX=10090 GN=Apaf1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004274 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00931 all species →	NB-ARC	NB-ARC domain	Domain	Interproscan
PF17908 all species →	APAF1_C	APAF-1 helical domain	Domain	Interproscan
PF21296 all species →	APAF-1-like_WHD	Apoptotic protease-activating factor 1-like, winged-helix domain	Domain	Interproscan
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF00619 all species →	CARD	Caspase recruitment domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR001315 all species →	Domain	CARD domain	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR011029 all species →	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR002182 all species →	Domain	NB-ARC	Interproscan
IPR041452 all species →	Domain	APAF-1 helical domain	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR048975 all species →	Domain	Apoptotic protease-activating factor 1, winged-helix domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR042197 all species →	Homologous_superfamily	Apoptotic protease-activating factors, helical domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22845 all species →	APOPTOTIC PROTEASE-ACTIVATING FACTOR 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0042981 all species →	Biological Process	regulation of apoptotic process	Interproscan
GO:0043531 all species →	Molecular Function	ADP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02084	APAF1; apoptotic protease-activating factor	-	Platinum drug resistance	ko01524	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.