Gene detail

Detailed information of ENSAPQP00000030831.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: CAB4039606.1, DNA dC-, partial [Paramuricea clavata]
Species Leptogorgia sarmentosa · all data for this species · gene families

Sequence

CDS

Transcript

ENSAPQT00000034460

CACATGCTGATGACGCCACACGCGCATTCTGTATGAACGTGTATAACGCTTAGATCTGTAGTTATAAAAACTGGTTACTATTTGTACATATGGCGCAAGCAACGAAAATTATTGGCGCCAGAGGCATCGGGAAGTTGATCACTAAACTCCCATGTTACGAGCCAGGTTGGCCGATAGAAAAAGGATCCATAATCTTgttgaataaaattaaaatgttcGATTCGAAATTAAGGAACGAGGGCTTACCTAACACCTTTTTTACACATCGAAAGGGAAACATTCACCGAGAAAGAGACTTTCTTAAAGAACTCACTGGTAAAATTCAATGTCGAAAACTCCAAgtagaaaaaataaaagccCAAAACTACTCGACTTATTCAAAATGCGCAGATGCTCTTCTCATAATCAAAGACGCAAGAAGAGACGGAGACATTGGATTTTCTCTGAAAATAGAATTCGCAAACATTTATCGTTTATGGGAAAAATGGAACagaaacagtttgaaaatgttggtGAAAAACGGTGTAGCTTTGGGGTCGATTCAAGGTGAGGATGACTGGAAAGCATTTTTAAATGATGAGAGATTCGTGGAATTAACAGACCGTGAGAAACCGAAACTTCTCGAAAGTGCAGAATTAACAGCAAGAATGAACAACGAAAGGCAAGGCATAAAAATCTTTAACCACATTGGAGTTGGAAATACATTCTTACTGTTAGGTGATAATCCTGCATATCCTTATGATGATGTGACTGATGGCGATGGTGACAGGAAAGATGTAAAGGGTGAAAATGGTAGTGATGGTAAAGATATTGGTGTTAAAGATGGTGGTGACGTTAAAGTTGGTGGTGGTGTTAAAGTTGGAGGTGATGGTAAAGATGGTAGTCGTGTTAAAgttgatggtggtgataaagATAGCGGTGATCGTCAAAATGGTGGTCATGGCGAAGATGATGGAGATGAAGATCGTGGAGCACGGATTTTGCCAGCAAGTACGTCAAAGGGAGCTGACAAGATCGGAAAAGAAGACGTTGTGAAATTCATCATTACACACAAGTACGGTGAAAAACCTTGGGAATGGCCAAGTCGTGAAAACGCCACGATAGTGTTGAGCAGCGTCAACATACACTACACATTGTCAAACACTTCTAAAACCTCCAACGAACATCACACACTATCTAGGAATAAGGTTTACAAAAATCGAAGCCTACATGCGGAAGTAAAATTTCTTCGCAAACTTAGAAAAGCAATTGATAAACTATCACAAGACAAGAAAGTCAGCCTCGTCGACATACATGCCGATCTTGTTCAGAACTACTCTCCTTGCAATAGTTACCGCCTTGGTGGTAAATCAGGATGTGCAGATGATTTTCTCAAATTCAAGGAGGACATGGAAAAGAATGGCAGTAACGTTTCTTTGAAGATAAAGTTTGCGAACTTTTATAGACATACAGATGAATCAAACAGAGCAGGGTTACGGAAACTGGTAGAGAACGGTATTAAATTAGAGTTATTTCAAGGCGAAGAGGATTGGAAAGTGTTCTTAAAcaataaaactaaaaaattAACTAAAGATGATTATAGAGAATTACTGGAAAGGGCGACTTCGGAAGAAAGGACGAAAAGAGAAATGGATGACGTGGAAATTCTTCGCAATATAATATCTGGGGCTCCAGAGGCGGAGGAAAACATGCTGTAGCGGTGGAAGATCTTCCAGAAAAAATCAGAAAGTCTTCCACGGAATCCACACGCAATTTCAGCAGGACTGATAAAAGAGCTTCGAAAAAACGAAGGGTGTTGAAATCCAAGAAACGTGATGTCGATGATGAAGGCGATAGACGATAATTACTTTacttattttatttatttatttatttatttattcattttacttatttatttttatttatttattttttatttattattatcatataTAGAGAACAAAATTACTTGAATATGACTGGCTAATAAGGaaagcattttttttatta

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010020 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18750 all species →	SNAD4	Secreted Novel AID/APOBEC-like Deaminase 4	Family	Interproscan
PF18778 all species →	NAD1	Novel AID APOBEC clade 1	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050610 all species →	Family	APOBEC Cytidine Deaminase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13857 all species →	MRNA EDITING ENZYME	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0004126 all species →	Molecular Function	cytidine deaminase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016554 all species →	Biological Process	cytidine to uridine editing	Interproscan
GO:0080111 all species →	Biological Process	obsolete DNA demethylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09485	HSP110; heat shock protein 110kDa	-	Chaperones and folding catalysts	ko03110	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.