Gene detail

Detailed information of ENSAPQP00000030855.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: CAB4012532.1, Hypothetical predicted protein [Paramuricea clavata]
Species abbreviation LSARM · all data for this species · gene families

Sequence

CDS

ENSAPQT00000034489

ATGGCAAGTCAACAGCGACAGTTACCTTTTTTCAAGACAACTGCGAGCTCATCAACAACGTCTGGGTCTTATTTCTTAAACTATAACACAAATACGAATAGAAATGGAAACCAGAGCAACCAGTCGCAGCAAAATGCTCGCACAAACTCGACATCGGTAACTAACTTCTTCGCACCAAATAGTACGGTCACAAGACAAAAGGATAAAGAATTGGAACTCGAAACCATGGCAACAGGAGGATTTTCAACAATCAGTCGGCTACAACAGCAAGCCGAAAAAGCACGAATATCGGCGACAAAAAACGAACTTGATCTGGACGATAAGGAAAAAAAACTTCAAGACGCCAATCAAACAATCGAGTGTCAGAGAAAGTCTATTTTCCAACTACAGTTCCAAAATGAAAAACTCAGTACGAAACTACAAGACGAGATGGCCGGTCAAGCTGAACTGGAACAAAAGGCCATCGCTACAAGAGAGTTGAGTAAAGTTCTCAAAGACCAAGTTCTGAGAATTGACGAAAATATTGCGGCAGGGGAACAAGACCGTGAAGAGTTACATTACTCGGAAAAGCATCGCTTGGAACAATTTCAGGAATTGGTGGTAAAATTTCAGGAATTGGAAATACAACATTCAACAAAGTATAATGAGATGAAGGATAAATTACAAAAACAACACGAGAAACATTCGGCTCTTACATCGGAGGCGGCACAAAAAATCCaggaaaaagagaagcagATCAAAATGTTAAGTGAGGAGAAGGCGGAAAAGGACTTCAAAATATCAGCACTGGTTAAAGACTTGGGCGAGAATCGCGAACACTTGGAGGCGACGAAAAATGAAGAAGCTGCGCTCAAGGATAAATTAAAGAAGTCTGAAAGCATAATCACATCCCAGGATATCAACATCAAAAGTGTCAATGAAATGCTGACTTACACACAGGAGGACAACAGAAAATTGATGTCTCAGACATGTGAGAAAGATCGCGTATTGGCACAGCTACAGCAAGAGAAACTCCAGTTGGAGCAAGTGctcaaggaagaagaaaagcAATACATCCTAAAGACAGAAGCATTTCAAGACAACATCATGCAGTTGACAAACGAAATTGATGAACATAAAGCCAGGATCAAAGAGTTAACGGACAATGTAGACTTGCTGACAACAGAATTGGAGCAAAAGAAGAATGACTCGGATGAACTCAAGACGGAAACCGAGAGGCTTTTGAAAGAAACGGAGGAACTGAAAGAGTCAAATGAAAAGCTGACCGGCTACCAGGAAGATCTGATCAAGTGTTTGCGTGATCTCGAAGCTGAGAAGAACTCCTTGGAGAAAAAGATTTTAAGTTTGACAGAGAAGGAAAACGAATTTAAGACGACGCAAGAATCATCCAAAGCGTATATGACACAgcttgaaaaagaaaaggcaTCTTTAGAAAAAGAGATAGAAAGCAACTTGAAGACTTCACTTGAAAAGGGGAGTTTAGTCGAAGACCTACAAATGGATttgaaagaagcaaaaaaGAAAGAACAGTCGATGCAGAAAGAGATAGAGAAATTAGAAAATCTCCTTCAGGAAGGATGCCTTGACCAGGACAATATCAAAACCCAGTTGGACGAAATTAAGGCAGAAAAGAAGAAAGTAGAAAAAGAGTTGGAACAAGCGAAAAAAGAGATCAAAGATATGAATTTGAAGATAAAGAATTTAAAGAAAAGCGAGGAAGACCTGAAGAACAACTTGGTCAAATCAACTGAAGAACGAGAAAAATTAGAAGCTGAAGTCTCACAATTAATGAATGAACATCAAGAAAGAAAGGATGAACTTGATCAAACGTTGGATAATGAAATGAATACTACCAAAACTTTAAGGCAAGAAATCAACTCCaaagaaaaagaattaaaTTCTCTTGAGAATAAGAACAAAACACTCCAGAATCAACTCACGTCAAAAACGAAGCAACACAAGGATTTACAGCAAGAGGTGAAGACACTGAAGAATAACTCAACGACACAGACGAAGAAAATTAAAGCCCTGGAAAAAAAGAACGAAACCCTGGAAACAGACATTGAGCAGAAAAACGCAGAAAATGATGATTTACAGAAGGAGAACGAAAATCTGAAAGAGGAAATGGCAAAGACGACGAAGGAAAACgcaaaagaaataaaagaaCTGAAACAGTTGCAGTCAGCCATTGATAAAGGCGTGGCCCACAGCAGTAGTTTGGAAGAAGAAATCAAAACGTTGAAAGAAACCACCGAGAAAGCGGTGAGAGAGAAAGAAGAAGCTCAATGCAGATTTGACAAGGATCGCGCTGAATTGTGTGCTACGTTGGAAAATTATAAGGCGGAAAACGAATTGATTATTGCTCAGAAGGAAAAAGACCTGGAAAAGTTCAAACAAAGCAAAGAAATAGACAAGGAAAAACAGTTGAAGAAGATCAAGGAATTGGAGCAACAACTGGAAGATCTCAACAAAGCAAAACTTAAAGACGAGAAAGCCAAGAACAAACGGATCATGGATAAGGAAGCAGAgatcaatattttgaaagcGCAATTATTGGAGAAGGAAGAAGAAACGTCGGGAGATGTAGAGATGCAAAGAGTGGACGAAACTCCTACGCGTTCGGAACACATTGTGCCTTCCACTCCAAAGACACCTCGAAGCATTCTCAAGCAGTCCGCACAACCATCGAAAAAACGCAGAGTGGCATTTAGTTCTGAGAAATCGAAATCATATTCATCCGATGAAGATGACAAGGCTTTTAAGGTGTTCAGGCCGAATGAGAAGACGTCAGTACAACGCAAGGGTGCCAGTCCAGATATTCCCACTAAAGCAGTCAGACCAAATGTTCGACATTCTCCTGCACCGAGCCAAACGTCTGTGCTGGCCAGGAAATCGAACCCGTCTCCTTTGAACTCACGCAAGTCCACAAAAAAGAACTCGCCAGAAGAAGGAACTATTGATGATGAGTTGAGACAGTTCAACGAGCTATTTCCAAAAATTAACTTTCAGCCAGAGAAAAAAAGCGAAAAGGTCAAAGGCAAGAAACCGCCTTTCAAGGGCAAGAAACCGCCTTTCAAGGgtaagaaaacaaaaatttcaccaAGGAATAAACACCTTGACGTCGATTGGTTTGATAACGACGCTTTCTTCGGATTTGACGGTTAG

Transcript

ENSAPQT00000034489

CTATTTAAGTGAAAATGGACGTGTGTTTATGACTAGTATATAAAGACTTGCTCTTCATAACAAGCGAGTCGCGAGGATTTCACACCAAGTAAATGGCAAGTCAACAGCGACAGTTACCTTTTTTCAAGACAACTGCGAGCTCATCAACAACGTCTGGGTCTTATTTCTTAAACTATAACACAAATACGAATAGAAATGGAAACCAGAGCAACCAGTCGCAGCAAAATGCTCGCACAAACTCGACATCGGTAACTAACTTCTTCGCACCAAATAGTACGGTCACAAGACAAAAGGATAAAGAATTGGAACTCGAAACCATGGCAACAGGAGGATTTTCAACAATCAGTCGGCTACAACAGCAAGCCGAAAAAGCACGAATATCGGCGACAAAAAACGAACTTGATCTGGACGATAAGGAAAAAAAACTTCAAGACGCCAATCAAACAATCGAGTGTCAGAGAAAGTCTATTTTCCAACTACAGTTCCAAAATGAAAAACTCAGTACGAAACTACAAGACGAGATGGCCGGTCAAGCTGAACTGGAACAAAAGGCCATCGCTACAAGAGAGTTGAGTAAAGTTCTCAAAGACCAAGTTCTGAGAATTGACGAAAATATTGCGGCAGGGGAACAAGACCGTGAAGAGTTACATTACTCGGAAAAGCATCGCTTGGAACAATTTCAGGAATTGGTGGTAAAATTTCAGGAATTGGAAATACAACATTCAACAAAGTATAATGAGATGAAGGATAAATTACAAAAACAACACGAGAAACATTCGGCTCTTACATCGGAGGCGGCACAAAAAATCCaggaaaaagagaagcagATCAAAATGTTAAGTGAGGAGAAGGCGGAAAAGGACTTCAAAATATCAGCACTGGTTAAAGACTTGGGCGAGAATCGCGAACACTTGGAGGCGACGAAAAATGAAGAAGCTGCGCTCAAGGATAAATTAAAGAAGTCTGAAAGCATAATCACATCCCAGGATATCAACATCAAAAGTGTCAATGAAATGCTGACTTACACACAGGAGGACAACAGAAAATTGATGTCTCAGACATGTGAGAAAGATCGCGTATTGGCACAGCTACAGCAAGAGAAACTCCAGTTGGAGCAAGTGctcaaggaagaagaaaagcAATACATCCTAAAGACAGAAGCATTTCAAGACAACATCATGCAGTTGACAAACGAAATTGATGAACATAAAGCCAGGATCAAAGAGTTAACGGACAATGTAGACTTGCTGACAACAGAATTGGAGCAAAAGAAGAATGACTCGGATGAACTCAAGACGGAAACCGAGAGGCTTTTGAAAGAAACGGAGGAACTGAAAGAGTCAAATGAAAAGCTGACCGGCTACCAGGAAGATCTGATCAAGTGTTTGCGTGATCTCGAAGCTGAGAAGAACTCCTTGGAGAAAAAGATTTTAAGTTTGACAGAGAAGGAAAACGAATTTAAGACGACGCAAGAATCATCCAAAGCGTATATGACACAgcttgaaaaagaaaaggcaTCTTTAGAAAAAGAGATAGAAAGCAACTTGAAGACTTCACTTGAAAAGGGGAGTTTAGTCGAAGACCTACAAATGGATttgaaagaagcaaaaaaGAAAGAACAGTCGATGCAGAAAGAGATAGAGAAATTAGAAAATCTCCTTCAGGAAGGATGCCTTGACCAGGACAATATCAAAACCCAGTTGGACGAAATTAAGGCAGAAAAGAAGAAAGTAGAAAAAGAGTTGGAACAAGCGAAAAAAGAGATCAAAGATATGAATTTGAAGATAAAGAATTTAAAGAAAAGCGAGGAAGACCTGAAGAACAACTTGGTCAAATCAACTGAAGAACGAGAAAAATTAGAAGCTGAAGTCTCACAATTAATGAATGAACATCAAGAAAGAAAGGATGAACTTGATCAAACGTTGGATAATGAAATGAATACTACCAAAACTTTAAGGCAAGAAATCAACTCCaaagaaaaagaattaaaTTCTCTTGAGAATAAGAACAAAACACTCCAGAATCAACTCACGTCAAAAACGAAGCAACACAAGGATTTACAGCAAGAGGTGAAGACACTGAAGAATAACTCAACGACACAGACGAAGAAAATTAAAGCCCTGGAAAAAAAGAACGAAACCCTGGAAACAGACATTGAGCAGAAAAACGCAGAAAATGATGATTTACAGAAGGAGAACGAAAATCTGAAAGAGGAAATGGCAAAGACGACGAAGGAAAACgcaaaagaaataaaagaaCTGAAACAGTTGCAGTCAGCCATTGATAAAGGCGTGGCCCACAGCAGTAGTTTGGAAGAAGAAATCAAAACGTTGAAAGAAACCACCGAGAAAGCGGTGAGAGAGAAAGAAGAAGCTCAATGCAGATTTGACAAGGATCGCGCTGAATTGTGTGCTACGTTGGAAAATTATAAGGCGGAAAACGAATTGATTATTGCTCAGAAGGAAAAAGACCTGGAAAAGTTCAAACAAAGCAAAGAAATAGACAAGGAAAAACAGTTGAAGAAGATCAAGGAATTGGAGCAACAACTGGAAGATCTCAACAAAGCAAAACTTAAAGACGAGAAAGCCAAGAACAAACGGATCATGGATAAGGAAGCAGAgatcaatattttgaaagcGCAATTATTGGAGAAGGAAGAAGAAACGTCGGGAGATGTAGAGATGCAAAGAGTGGACGAAACTCCTACGCGTTCGGAACACATTGTGCCTTCCACTCCAAAGACACCTCGAAGCATTCTCAAGCAGTCCGCACAACCATCGAAAAAACGCAGAGTGGCATTTAGTTCTGAGAAATCGAAATCATATTCATCCGATGAAGATGACAAGGCTTTTAAGGTGTTCAGGCCGAATGAGAAGACGTCAGTACAACGCAAGGGTGCCAGTCCAGATATTCCCACTAAAGCAGTCAGACCAAATGTTCGACATTCTCCTGCACCGAGCCAAACGTCTGTGCTGGCCAGGAAATCGAACCCGTCTCCTTTGAACTCACGCAAGTCCACAAAAAAGAACTCGCCAGAAGAAGGAACTATTGATGATGAGTTGAGACAGTTCAACGAGCTATTTCCAAAAATTAACTTTCAGCCAGAGAAAAAAAGCGAAAAGGTCAAAGGCAAGAAACCGCCTTTCAAGGGCAAGAAACCGCCTTTCAAGGgtaagaaaacaaaaatttcaccaAGGAATAAACACCTTGACGTCGATTGGTTTGATAACGACGCTTTCTTCGGATTTGACGGTTAGATCTATGTCATTGAAGCATTTTGCATTCCTTTATTCATACGTATTTATTGAATCACGTTTACTAAAACAGAATTCCAGTTGTAGTGTTcatgaatatttataattCGAATTAATCAAAAtctaataattattaatgttAAAAATTCCGAAATTTTGGTACTGCACGCGATTATTTATCAATTTAATGACCATAAATTTATTGTAAACTTCGATTTCAAATACATTTGATATGCAGTTGTAAGATACAGTTCGCAAAAGCTATCCAACATTTTATTCAACgttataatttttcattatgCGAAACTCAAGAAATTCACGAAACgctaattataataattagcGCACGCCTTAATTAAAATACGCGCAAAGCGTTCTAATTCTGACGTCATAAAGAACCAATCGCAGTCCACACAACACAGACACACACAATGCAAGACGACAACACGTAAGCTTCATCGAAACCCAC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q03410	Synaptonemal complex protein 1 OS=Rattus norvegicus OX=10116 GN=Sycp1 PE=1 SV=2
Q62209	Synaptonemal complex protein 1 OS=Mus musculus OX=10090 GN=Sycp1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005881 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05483 all species →	SCP-1	Synaptonemal complex protein 1 (SCP-1)	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008827 all species →	Family	Synaptonemal complex protein 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46918 all species →	SYNAPTONEMAL COMPLEX PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000795 all species →	Cellular Component	synaptonemal complex	Interproscan
GO:0007130 all species →	Biological Process	synaptonemal complex assembly	Interproscan
GO:0000711 all species →	Biological Process	meiotic DNA repair synthesis	Interproscan
GO:0000801 all species →	Cellular Component	central element	Interproscan
GO:0000802 all species →	Cellular Component	transverse filament	Interproscan
GO:0001673 all species →	Cellular Component	male germ cell nucleus	Interproscan
GO:0003690 all species →	Molecular Function	double-stranded DNA binding	Interproscan
GO:0051026 all species →	Biological Process	chiasma assembly	Interproscan
GO:0051878 all species →	Biological Process	lateral element assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19533	SYCP1; synaptonemal complex protein 1	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.