Gene detail

Detailed information of ENSAPQP00000030880.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: XP_022111726.1, uncharacterized protein LOC110990969, partial [Acanthaster planci]
Species Leptogorgia sarmentosa · all data for this species · gene families

Sequence

CDS

Transcript

ENSAPQT00000034519

GCCAAACGTCAGTGAATAGGTGTGtagattttgaagaaattaccGCTGATCCTAAAGACGATAACGAAAAATCTGGCGAGGTTGGCGCAGATTTAGAAGAAGACGGCGCGCATATCACACAGTTGTCATTTGTCAAACCAAATTCGAGATATCTTCAAGTATGGATGAATTTACGATAGAAGATGTCAAAGAATTCATTATCCTAGGCCAATACGGCGTGCCTGGAGAATGGAGCAACATAACGATAGTGTTAAGCACAGTCAAAACTGTTGACGATGCCGGAACTGAATCGCTGTGGTATGAACGTGTTTACAGGAATATAACACGCAAATATCATGCGGAACAATCTTTTCTCACAGActttcaaaaagaaatttccaaaaaaaatcactcgaataaaaaatttaaagcatatctttatcaaaattattctCCCTGCGATTCATGCGCCAGCAAAATCATCGGATTTATGGATAAAAATAAGGACTTTgacatttctttcaaaataaagtttgcaaatatttacGAACATTATGAAGATGAAAACCTAAAAGGCTTATCGAAACTGTATCAAACGGATGGCATCGATCTTCATTTAATTCAAGGTAAAGATGGTTGGGAGGAAGTTTTAGCGTTGCCATTCCTTGATAAATTAACGGATGCTGAGAAAGGGCAACTACGTAACAGAACAAAGAAGAGGAAAAGGAAGGACAACGAAGAGAAAggaaaaaaaatctttgaGGAAATTATAAATCCAGGTAAACCCGATGTTTCAAGTCAGTCCGAGAGTACAGATGAATCCGAGAGTACAGGTAAAGCTAAGACTCCAAGTGAAGCCAAGACCCAAGATAATTCCGGGTCCTCAGATGAATCCGATTCCTCAGATAAAGGCGAGAGTCGAAGAGAGGATGGCGCAAATACCGAAGAAGATGGCGGGGAATTAGAAGAAGATGGCAGGGAGTCAGAAGATGGCAAGGAATCAGAAGAAGATCACCCCAATTCTTGAATTAACTGGCAACGTCTGAAAACATTTCAGCAATCAAAATTCTTTATATATTAGAtagatatttgaaaaataggtCGAGTCATTCAGGAAGTGACGCTGCTAATGGACAATAGCTTCAATCGATTACAGTATTGCAAGCTCTTCCAAAATTATCTCGTATCGATAGATCGGCCTCTCTCGCAGCTAAACCAGACATATTTGGGTAGCGTCTGCACACAGTAAAGGGATTTTACAGTTAAACAGAGTGACTTTTAAAGTTGTAATTGTTTATTTACTACTTTACAAATACGTACAGTCACACGTACATACGCATAGAAAGTCGCATTTGCAGGGTGTATATAAGCATAAACGTAATTGAGCAGAACCCAAAGCAGGTCGGCTCTATCTTTCGATGCTACACGGCATCAAGATGCATCAAATGAGCTTACGACTGCTTGTGATTTAAAATGTATGATTCCTCATTCATGGACGGGataaattattcatatattttgcatattgATATTCTTGATGCTGCCATGCTTTGTGAGCTTCCTGAAAGATACGAAATTTCTGACTTtcacatttcacttttttAACTTAATGCCTGTTTCAGCACAACTATGTTAATCGAGagaataacaaaatttttaaaatactttctCATAGCAGGAGGTTTCACAAAATTTCCATAAGAACAGAACAGAGAAATTTCTCACAGCGAGATGTCTCGATAGGTGGTCTCGTAATTTCTTAAGTATTcttaagaaatatttaaaaattgcaaCCTATAAGTTTGggattttgaaattgttttctttcgaCCAACGAACTATTTATTATAGGTGAAAATGATCAATTGCGGAGAAAGATTTCGATCGATTATTTGGTGAATCGGTATAGACTATACAGAGTATATATAGACTTTATATTGGCGAAATAAGTTTGTATGTATGTGCATTGTATTTGTATGCAAAACAGTTGAGTGGACAGATACTTACAGCAAGTGGAATGTTTTCA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010020 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18750 all species →	SNAD4	Secreted Novel AID/APOBEC-like Deaminase 4	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016192 all species →	Binding_site	APOBEC/CMP deaminase, zinc-binding	Interproscan
IPR050610 all species →	Family	APOBEC Cytidine Deaminase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13857 all species →	MRNA EDITING ENZYME	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0000932 all species →	Cellular Component	P-body	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0004126 all species →	Molecular Function	cytidine deaminase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0010529 all species →	Biological Process	obsolete negative regulation of transposition	Interproscan
GO:0016554 all species →	Biological Process	cytidine to uridine editing	Interproscan
GO:0045869 all species →	Biological Process	negative regulation of single stranded viral RNA replication via double stranded DNA intermediate	Interproscan
GO:0047844 all species →	Molecular Function	obsolete deoxycytidine deaminase activity	Interproscan
GO:0051607 all species →	Biological Process	defense response to virus	Interproscan
GO:0070383 all species →	Biological Process	DNA cytosine deamination	Interproscan
GO:0080111 all species →	Biological Process	obsolete DNA demethylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSAPQP00000030880.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.