Gene detail

Detailed information of ENSAPQP00000031062.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: CAB4003308.1, Nuclear pore complex Nup153 [Paramuricea clavata]
Species Leptogorgia sarmentosa · all data for this species · gene families

Sequence

CDS

ENSAPQT00000034733

ATGGTGGACCAGCCGAACCATAGATCGTACAAAATACGCGGTCATACGCGACTACGAAAAAGCTCGAAACCCTATTCTAGGCCCAACGAACCGAAGAATAAAGGTTTATTGGATAAAGTAAAGGATTATTTGAGTCCGTCGTGGTTGTTTGGATATTTTACATCGAATGAAGACGAATGCGAACCGTCTAACTTCGAAGATGATGCCTTAGATGAGAATGCTACTGTCACACATGAAGAAGGAGGCTCTTCTAGTTCTTGTATTCCAGATCAAGACCGTTTAGCCAGccttgaagaagaaaatgatgaagatgatgcaTTTGAGAAGGACAATGATACAAATACATCAGGTGATAAGGTACTTGATGCAAATAATACAAGACAAGATAGAGTGGAAAAGGCCAACACTTCAATCAGATTGTCTGGATGTCTTAACGATGACATTGAAGATGAAAATGAGAAGCAAGTGCAACAACAGACAGACAGACCTCAACAGTCTCTTCTGTCATATTCAACAGACCAACTAACACGAAAACCTTTGCCATCGTTGCATTATCGCTCAACATCCAGCTCGCTATTACAACAACGAGGAACACCAAGCCTTCTTTCTCAAGGAAAGTCCTTGCTCAGGCCTATGTCGACTGGGGGTAATTCATTTACTCCAAGTCTTAAACTTTCAACACCAATGGTCTCAAGTGGAACTACAGGTTTTTCTAGTGCACATAAGTCAATTTCCAGTCAAACTAAGTCTGGCACATCATTGACCAGAAGTTCATCTCTGAAGGACAATTTtaccagagctaaatccttgaCGGCTTTCGCTACACCAAGACTTAGTAAAACAACATCCAGTTCTGCTTTATCTCGGCCTGACGTTGCCGGAGATTCAGCGCCATTGTTCTCTGTGGAGAAATTTGTCACTCCTGTGCAAAGAACGTTTACAAACAAGCGAGTAGGATCACCAAGTTATCCAGGGCCAGTAATGTATGGAGGAGCTTTAAATGTGTCACGGGATGTGCCATTCAAACGAAGAAGGACAGGTTCTCCTGGCTCAGAGAGCTTCCATTCTGTATCAAATCTTCGCATTAGGGGAGTGAAAGAAAAGACTATTCAGAGCACAACTGTGGGTGGAACAGGAACCAGAACAGCCCAACGAATACTTGACGCTTTGGAGTCAGTCTCATCACCACTCAAGGATGTTCGTCGTATTCCATCTCCAATTTCTTTGGCCTCGGCTTCACCACTGTCATTCATGCCATCAAAGATGCGGATTACTCCCCCAAAAACCAAAGTTGGCCCACGAGTTTCGTATCTGCAGGCCAAATTGCTCGGTGACCCTCCTGTATCATCACTACAAACTCCTGATGTGGCAAAAGTTTCTTTTGTTGAAGATTCTACGTCCAGAGAACCTCAACCCAGCTCCCCTCCATCCTCCCCGCCAAGAAAGGCTTCGAAAAAGCCTGTTGCAGACCAAACATTtttcagtGGTCTCAAAGACACGGTCCTTAAGAGCTCACTTCCAACTTCCTTTGCTCCGAAATCTTTGCCAACATCGCTGTCGCCCATAGAAAACTCTGGCAAATCGTCTGGCAAAATGAGGACTGCCCCTCGCAGTGCAGCCATGCATTATAGCTCTTATAAAAATAACCAAGATGAAGAGCTTGTCAATCCATTGCCTGAAATTCGCAATGCCGTGCCACTGCCTGTCAATCCAGGCAGGAACATGTCTTTACCAATGTTCAATACAAACAAGACAAATGGTGACGCTAAACCAACAAATAAATCCGAGAATATCTTCAACAAGCAGAAGGAATCGTCATCAAATGGCAAGTTATTGACAGAATCACCGAAAAATGGTTTCATATTTTCGACACCTCAACCGAAGTCTCAACGTTTTTCAGTAAAGGAGAGTTTGGAAGTGGCTGATGATGAGGTTTCGTTTGCGTTCAGTGAACCAGTACCTGTTAAGACGAACTCTGACAATGTCAAAGAAACATTCACGAATCCTCTATTGCAAACTCAGACACCGTCAAACAGTTTTAAGCCAACAGCAGACCATTCTACGAAATCGAATGCTCCGTTTAGCAGAAGTCTTCTGAGAAACGACACAACCGATTCTGGAAGTAGTAAGATTCTGCCCACTAAGACTTCTGAGAAATCTGAGCCTGCACAAACCAATAACTTATCCCAGCGGTTCGCCCCAGCTGCGGGCTCATGGGAATGTACTTCATGTTTGGTCAACAATAATGTCGACGCAGTGAAGTGCGTTGCTTGTGAAACAGCAAAACCCTCCGCAAAGAAAACCGGTAATACGAGCAAAGACAAACAGGAAAAACAGGAACATGACCTGAAAGCAAAGTTCGCCCCGCCCAAAGATACATGGGAATGCGAGACGTGTTTGGTGAGGAATAAAAATGAGTTGAACAAGTGTGCCGCGTGTGAGACGAAAAGACCTGGGACGAGTGGAAATGATGATTTGAAACTTAAATTTGCTGCCCCTAGTGACTCATGGGAATGTCCAACGTGTATGTTGCGAAATAAAGCCGCTGACCTAAAGTGTGTCGCATGCGCAGCGAGTAAGCCCGGCTCTAGTTCTAGTGACAATTTGAAACTTAAATTTGCAGCTCCCAGTGGTTCATGGGAATGCTCAACGTGTTTAGTGCAAAATAAAGCCGCTGATTCGAAATGTGTAGCGTGTCAAGCGAACAAACCTGGGACCGAAAGTTCAGGTTCAAGTCAAACTGGTTTCACCTTTGGTCAAACAAGTGCTACAAGTGGCTTCACATTTGGCGCCAGCGATGCCTCCAAGTCAACCTCAAGCTCCGGGTTTACGTTCGGTAATAGCAACACCGGACAATCCGCTGATCCGCCAAACACGTCGACGTTTACCTTTGGCCAGGGTTCCAGTGAGACCACGACGAAAGCCAATCCGACGTTTAtttcaacaacaacagcaagtGGCGTTTCGAAACCCACTTCTGGGTTTACTTTCGGAGGAAGCTCAGGCGAGAAGCCCGCTACAAAGCCGACATTCACTTTTGGTGCTGGCTCAACAAACGAGGGAAGTAAACCAACGTTTTCGTTTGGCGCTAGCAATTCGGAAAACGCGTCGAGTCAAAATGACGGTTTGCAGAAAGAAGAGAACAAAGACAAACCAAACGAAAAGCCCGCACCGGCAATGAATATCGCACAAGCTGCGGCTGCAGGCTTACTGAAAGTCCCTGGTAAGGATGCCACACCAGCTCAAGATAACGTACAAGTTCCCGCTCAAGCTCAGAATCAAGCTCTGAAGCAGAGTCAAGCTACAACCGAACCTCCCACAGTTCCAAATTTCACGTTTGGCGGCGGGAACGCGGCATCAGCAGGGCCTGGGGAGCAACGAGCTGATGTCAAGGCATCTGGTCTTGGGTTCACTCCAATTCCTTCGTCAACCGCACAGGTGACGCCGTTCGCTTTTCAATCAACAGCGGCATCTACAGCGTCTACTAATCCCTCGGCAGGAGGCCTGTTCACTTTTGGAGCTCAACCAACAGCAGTTTCGGCCGTAACTTCGTCGACTGCTAAGTCCTTGTTTTCGTTCACTGGCGGCACAAATCCTACTGTTCCTTCCGTCAACACTCAACTGCCATCCGGTAGTGGAAAAAACACACCTTTCTCGTTCACTCCATCAAACACCCCTACAACTTTACCCAACGCTACAACAACTGATCCGGTTCTCCCCAAAGCAAACTCTATTGTGCCATTTAACTTTTCTGGATCTCTGCCGTCTGCTAAGACAACTGTCTCGTCGAATCAAAGTAACCCTGCACCGTTCTCATTCACTGGTGCGACATCAACTGACCAGGCTAAGCCAGCCTCTCTGTTCAATTTTGGTGCAGTAAATGGCCCCACATCGAGTAACGGTCCAAATGTCGTCACTGCACCGACAGGAACTGGGTTGTTCTCATTCACTGGATCTCAGCAGCAATCTACAGCACCAGTCGTTGAAAATCAGAACTCCATGGGAGGCGAGGAGATGGACGCAGACtcaaataataatcatgatcaaaaTACTTTTCCTCAAACCACAGGTGGATTTAACTTCTCTGCACCTACGGCAGGAAATACGTCAAGTATTTTTTCTGCGGGAACTAACGCTACACCAGGTGGTACGCAAGGAGGTTTTCATTTCAATGCTAATTCTGGCATAGCACCAACATTTCAATTTGGAAGCAACAACAGTACTCCTTCTGGGGGATTTAATTTCGGTGGAGCTGCGCCAACCGGTGGATCTACTTTTATGTTTGGCGCCACATCAACACCTGCCAGTGGCCCTGCGAATTCTTCGACGACACCTGTTCCGTTCAACTTTGGTCCCACCTCGGCACCTACAAAACCTCAACAGAATGTCGGTCAAAGCACCGCGCAACCCAATATGTTCAATATTGGAGCCACTCAAACCGCACCAGCTACCCCGCGAGTGTACAAAAGAGGCGTGCGACGTAACCGACGATAA

Transcript

ENSAPQT00000034733

TGATTGGAAATCGTAGAAAAGAAAGCTTTAAAATCGCGGCTGACGGCTAAAACTTGTTCCTATACCTGCTGCGATTGTCCGATCGCATAATGGTGGACCAGCCGAACCATAGATCGTACAAAATACGCGGTCATACGCGACTACGAAAAAGCTCGAAACCCTATTCTAGGCCCAACGAACCGAAGAATAAAGGTTTATTGGATAAAGTAAAGGATTATTTGAGTCCGTCGTGGTTGTTTGGATATTTTACATCGAATGAAGACGAATGCGAACCGTCTAACTTCGAAGATGATGCCTTAGATGAGAATGCTACTGTCACACATGAAGAAGGAGGCTCTTCTAGTTCTTGTATTCCAGATCAAGACCGTTTAGCCAGccttgaagaagaaaatgatgaagatgatgcaTTTGAGAAGGACAATGATACAAATACATCAGGTGATAAGGTACTTGATGCAAATAATACAAGACAAGATAGAGTGGAAAAGGCCAACACTTCAATCAGATTGTCTGGATGTCTTAACGATGACATTGAAGATGAAAATGAGAAGCAAGTGCAACAACAGACAGACAGACCTCAACAGTCTCTTCTGTCATATTCAACAGACCAACTAACACGAAAACCTTTGCCATCGTTGCATTATCGCTCAACATCCAGCTCGCTATTACAACAACGAGGAACACCAAGCCTTCTTTCTCAAGGAAAGTCCTTGCTCAGGCCTATGTCGACTGGGGGTAATTCATTTACTCCAAGTCTTAAACTTTCAACACCAATGGTCTCAAGTGGAACTACAGGTTTTTCTAGTGCACATAAGTCAATTTCCAGTCAAACTAAGTCTGGCACATCATTGACCAGAAGTTCATCTCTGAAGGACAATTTtaccagagctaaatccttgaCGGCTTTCGCTACACCAAGACTTAGTAAAACAACATCCAGTTCTGCTTTATCTCGGCCTGACGTTGCCGGAGATTCAGCGCCATTGTTCTCTGTGGAGAAATTTGTCACTCCTGTGCAAAGAACGTTTACAAACAAGCGAGTAGGATCACCAAGTTATCCAGGGCCAGTAATGTATGGAGGAGCTTTAAATGTGTCACGGGATGTGCCATTCAAACGAAGAAGGACAGGTTCTCCTGGCTCAGAGAGCTTCCATTCTGTATCAAATCTTCGCATTAGGGGAGTGAAAGAAAAGACTATTCAGAGCACAACTGTGGGTGGAACAGGAACCAGAACAGCCCAACGAATACTTGACGCTTTGGAGTCAGTCTCATCACCACTCAAGGATGTTCGTCGTATTCCATCTCCAATTTCTTTGGCCTCGGCTTCACCACTGTCATTCATGCCATCAAAGATGCGGATTACTCCCCCAAAAACCAAAGTTGGCCCACGAGTTTCGTATCTGCAGGCCAAATTGCTCGGTGACCCTCCTGTATCATCACTACAAACTCCTGATGTGGCAAAAGTTTCTTTTGTTGAAGATTCTACGTCCAGAGAACCTCAACCCAGCTCCCCTCCATCCTCCCCGCCAAGAAAGGCTTCGAAAAAGCCTGTTGCAGACCAAACATTtttcagtGGTCTCAAAGACACGGTCCTTAAGAGCTCACTTCCAACTTCCTTTGCTCCGAAATCTTTGCCAACATCGCTGTCGCCCATAGAAAACTCTGGCAAATCGTCTGGCAAAATGAGGACTGCCCCTCGCAGTGCAGCCATGCATTATAGCTCTTATAAAAATAACCAAGATGAAGAGCTTGTCAATCCATTGCCTGAAATTCGCAATGCCGTGCCACTGCCTGTCAATCCAGGCAGGAACATGTCTTTACCAATGTTCAATACAAACAAGACAAATGGTGACGCTAAACCAACAAATAAATCCGAGAATATCTTCAACAAGCAGAAGGAATCGTCATCAAATGGCAAGTTATTGACAGAATCACCGAAAAATGGTTTCATATTTTCGACACCTCAACCGAAGTCTCAACGTTTTTCAGTAAAGGAGAGTTTGGAAGTGGCTGATGATGAGGTTTCGTTTGCGTTCAGTGAACCAGTACCTGTTAAGACGAACTCTGACAATGTCAAAGAAACATTCACGAATCCTCTATTGCAAACTCAGACACCGTCAAACAGTTTTAAGCCAACAGCAGACCATTCTACGAAATCGAATGCTCCGTTTAGCAGAAGTCTTCTGAGAAACGACACAACCGATTCTGGAAGTAGTAAGATTCTGCCCACTAAGACTTCTGAGAAATCTGAGCCTGCACAAACCAATAACTTATCCCAGCGGTTCGCCCCAGCTGCGGGCTCATGGGAATGTACTTCATGTTTGGTCAACAATAATGTCGACGCAGTGAAGTGCGTTGCTTGTGAAACAGCAAAACCCTCCGCAAAGAAAACCGGTAATACGAGCAAAGACAAACAGGAAAAACAGGAACATGACCTGAAAGCAAAGTTCGCCCCGCCCAAAGATACATGGGAATGCGAGACGTGTTTGGTGAGGAATAAAAATGAGTTGAACAAGTGTGCCGCGTGTGAGACGAAAAGACCTGGGACGAGTGGAAATGATGATTTGAAACTTAAATTTGCTGCCCCTAGTGACTCATGGGAATGTCCAACGTGTATGTTGCGAAATAAAGCCGCTGACCTAAAGTGTGTCGCATGCGCAGCGAGTAAGCCCGGCTCTAGTTCTAGTGACAATTTGAAACTTAAATTTGCAGCTCCCAGTGGTTCATGGGAATGCTCAACGTGTTTAGTGCAAAATAAAGCCGCTGATTCGAAATGTGTAGCGTGTCAAGCGAACAAACCTGGGACCGAAAGTTCAGGTTCAAGTCAAACTGGTTTCACCTTTGGTCAAACAAGTGCTACAAGTGGCTTCACATTTGGCGCCAGCGATGCCTCCAAGTCAACCTCAAGCTCCGGGTTTACGTTCGGTAATAGCAACACCGGACAATCCGCTGATCCGCCAAACACGTCGACGTTTACCTTTGGCCAGGGTTCCAGTGAGACCACGACGAAAGCCAATCCGACGTTTAtttcaacaacaacagcaagtGGCGTTTCGAAACCCACTTCTGGGTTTACTTTCGGAGGAAGCTCAGGCGAGAAGCCCGCTACAAAGCCGACATTCACTTTTGGTGCTGGCTCAACAAACGAGGGAAGTAAACCAACGTTTTCGTTTGGCGCTAGCAATTCGGAAAACGCGTCGAGTCAAAATGACGGTTTGCAGAAAGAAGAGAACAAAGACAAACCAAACGAAAAGCCCGCACCGGCAATGAATATCGCACAAGCTGCGGCTGCAGGCTTACTGAAAGTCCCTGGTAAGGATGCCACACCAGCTCAAGATAACGTACAAGTTCCCGCTCAAGCTCAGAATCAAGCTCTGAAGCAGAGTCAAGCTACAACCGAACCTCCCACAGTTCCAAATTTCACGTTTGGCGGCGGGAACGCGGCATCAGCAGGGCCTGGGGAGCAACGAGCTGATGTCAAGGCATCTGGTCTTGGGTTCACTCCAATTCCTTCGTCAACCGCACAGGTGACGCCGTTCGCTTTTCAATCAACAGCGGCATCTACAGCGTCTACTAATCCCTCGGCAGGAGGCCTGTTCACTTTTGGAGCTCAACCAACAGCAGTTTCGGCCGTAACTTCGTCGACTGCTAAGTCCTTGTTTTCGTTCACTGGCGGCACAAATCCTACTGTTCCTTCCGTCAACACTCAACTGCCATCCGGTAGTGGAAAAAACACACCTTTCTCGTTCACTCCATCAAACACCCCTACAACTTTACCCAACGCTACAACAACTGATCCGGTTCTCCCCAAAGCAAACTCTATTGTGCCATTTAACTTTTCTGGATCTCTGCCGTCTGCTAAGACAACTGTCTCGTCGAATCAAAGTAACCCTGCACCGTTCTCATTCACTGGTGCGACATCAACTGACCAGGCTAAGCCAGCCTCTCTGTTCAATTTTGGTGCAGTAAATGGCCCCACATCGAGTAACGGTCCAAATGTCGTCACTGCACCGACAGGAACTGGGTTGTTCTCATTCACTGGATCTCAGCAGCAATCTACAGCACCAGTCGTTGAAAATCAGAACTCCATGGGAGGCGAGGAGATGGACGCAGACtcaaataataatcatgatcaaaaTACTTTTCCTCAAACCACAGGTGGATTTAACTTCTCTGCACCTACGGCAGGAAATACGTCAAGTATTTTTTCTGCGGGAACTAACGCTACACCAGGTGGTACGCAAGGAGGTTTTCATTTCAATGCTAATTCTGGCATAGCACCAACATTTCAATTTGGAAGCAACAACAGTACTCCTTCTGGGGGATTTAATTTCGGTGGAGCTGCGCCAACCGGTGGATCTACTTTTATGTTTGGCGCCACATCAACACCTGCCAGTGGCCCTGCGAATTCTTCGACGACACCTGTTCCGTTCAACTTTGGTCCCACCTCGGCACCTACAAAACCTCAACAGAATGTCGGTCAAAGCACCGCGCAACCCAATATGTTCAATATTGGAGCCACTCAAACCGCACCAGCTACCCCGCGAGTGTACAAAAGAGGCGTGCGACGTAACCGACGATAAATGATTGTGTAAGTCTCGTTCAAAAACTGGTTCCTTTACAAGGAGTTGGATGACTGTGTTATGCTGTGAattttttatgtaaacaaaactGCTAAACTGCTTGAAAACATTGGTAAAATTTCGACATCATCCCAATATATGCATACCCTTGCCATGTTGCGAAGCCTACACGGAAAATTTACGGCAAACAGGTGAAGCAAAAATGATTTTACGAATTTTAATGTTTGAAGAAAGTAGTTTTTGAACAAGAATGTATACACAGTTTTAACAAGACAAGACTGACTGAAACTCAAATGATGTGGACATTCCTATTGAAAACGTAACTTCCCAGAaaaaagtggcattttcaGAAAACGAAGTCCTGTAAATTTTGAGTCGCACTTGAAACAAAACACTTGAGACACAGAAGACTAGGACAGAGAATGAAAACGGGTTCCGACGTATAATTTTCGCAATTTTGATGGATATATACACACGTATAACCAGTACGTACATTGAAGATTGTTCTGTAATAACTAATATTACACAATAACATATTCTCGAGGAAATAGATCGAAAAAAGGGCTAAGGCACAAAAAGGAGCCGCAGCTAAATTATAGCTCAAACGACTCGGAAATAGCTTTTAATTTGTGCTTTCCAGTTTGAACGTTGGAAAGCTTATAGCACCAAATATTAATTCCTCAATTAGAATGCTTTCATGTTTCGTGCACGAGTGAATTTTTATTCGATATTGACCCCTGGTCTCGTGCAAACATGAGAATATATATGACTTTGATAAATATAAGGCGTTTTATTTAAAACAttgcatgaaaaatttctaTGCTGTGTTGTATGTACATATACCCACTCACGGGCCAAATCAAACCAATTCAAACTAGAGctattttattataattggGGTAAGGctaaaaaattatgcaaaatatttatttttatagtgTATATAAGGGAAATTTCGTATAAAATATTGGGGATGGGGGGAGGGTAACACGTAATATT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9VXE6	Nuclear pore complex protein Nup153 OS=Drosophila melanogaster OX=7227 GN=Nup153 PE=1 SV=4
H2QII6	E3 SUMO-protein ligase RanBP2 OS=Pan troglodytes OX=9598 GN=RANBP2 PE=1 SV=1
P49792	E3 SUMO-protein ligase RanBP2 OS=Homo sapiens OX=9606 GN=RANBP2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004961 (this species only)
Ubiquitin family	UBD\|ZnF\|NZF · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00641 all species →	zf-RanBP	Zn-finger in Ran binding protein and others	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001876 all species →	Domain	Zinc finger, RanBP2-type	Interproscan
IPR026054 all species →	Family	Nuclear pore complex protein	Interproscan
IPR036443 all species →	Homologous_superfamily	Zinc finger, RanBP2-type superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23193 all species →	NUCLEAR PORE COMPLEX PROTEIN NUP	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005643 all species →	Cellular Component	nuclear pore	Interproscan
GO:0006405 all species →	Biological Process	RNA export from nucleus	Interproscan
GO:0006606 all species →	Biological Process	protein import into nucleus	Interproscan
GO:0008139 all species →	Molecular Function	nuclear localization sequence binding	Interproscan
GO:0017056 all species →	Molecular Function	structural constituent of nuclear pore	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14296	NUP153; nuclear pore complex protein Nup153	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.