Gene detail

Detailed information of ENSAPQP00000031294.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: CAB3991001.1, U4 small nuclear ribonucleo 27 kDa [Paramuricea clavata]
Species Leptogorgia sarmentosa · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6DDA4	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Xenopus tropicalis OX=8364 GN=snrnp27 PE=2 SV=1
Q6GLZ8	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Xenopus laevis OX=8355 GN=snrnp27 PE=2 SV=1
Q8K194	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Mus musculus OX=10090 GN=Snrnp27 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007892 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08648 all species →	SNRNP27	U4/U6.U5 small nuclear ribonucleoproteins	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013957 all species →	Domain	U4/U6.U5 small nuclear ribonucleoprotein 27kDa protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31077 all species →	U4/U6.U5 SMALL NUCLEAR RIBONUCLEOPROTEIN 27 KDA PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0071011 all species →	Cellular Component	precatalytic spliceosome	Interproscan
GO:0008380 all species →	Biological Process	RNA splicing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12846	SNRNP27; U4/U6.U5 tri-snRNP-associated protein 3	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.