Gene detail

Detailed information of ENSAPQP00000031460.1 in Leptogorgia sarmentosa

Genomic Location: :...
NR annotation: CAB3977137.1, ancient ubiquitous 1 [Paramuricea clavata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSAPQT00000035197

gacGATATTTTCTTCTGACAGATTCGTTTCGAATTCTTCGTTACATGTAGCTAAATAGAGATTAGAGATTATAATTTATtccataatttataatttattttggaAACCTAAAGTGCAATATTCCATGTTACATAAAGTATTTAATTAATCTCAGCCACtgactgaaaatattttccaggaTATCTGGATGTACATCCTTTGATTGTTTTATTGTGGTTCCTTTTTTGTTCGTAAAAGTTCTCCTTTTTCACACATTATGGCACCTAATATTAGAATAGAGGATTTATTTCATCATAGCAGATTTCCAAAAGGACTAGCAATGTTTTTCTTACCATTTTATGTTCCCCTTGGTATTGTTGTCATGGTGATTCGGATCTTTTTTGCACTGCAGCTATATCTGGTTCTAGCTCTAATACCTAAATCATGGCTCATCAGACGATTATTGTTACGTATCTCTGGTGCGCTAACAGGAATGATTGTCACTCAAGAAGGAGTGGATATTGTTCACAGAACAGAATGCAAAATGATAATCTCAAATCATATAAGTCATATAGACAGTCTTGCCTTTGAATCTCTACTGCCTTGCTTTATGAATGCAGAGAAAAACAGAGTGCCAACATTTCTAAGATGGATTTTAAAATATGATGAAGTAAAACCTGATGATGCTGTTCCAACTCTGACCTTTCCTGAAGGGGCCAGTACAAGTGGGTCAATTGGGCTCTTAAAGTTCAGTTCATGGCCATTTGACATAAAGAATGATCCACTTGTCTTGGCATTAATAACCATATCAAGACCATATTTTGTGCAAATTTCTCCATCAGTCCTTGGAGGAAATTATTGGAGTGATCTTCTATGGCTTTTATTCACTCCTTACACTCATGTTAAAATAAGGTTTGTTCAACCTCCTAAAAGAGACGATGGGATAACTGATGAAGAATACAGTGTTATAGTCCAAAACTTCATGGCTGAAAAACTTGGGATAGGTGCAACCAAATTtgacgccaaagagaaaatggaATACGCAAAGAGATATTTTCATGAAAGAGCTCTCGTGAGAAATACTACCGCGTCGATTCAAGCTCGTACCTCTGGCGCATCAGCAAGCTCAGCTTTAGACAGTAGACTAGAATCTATGGCAACTCAAGTCAAAGATGTTCTACCGCAGGTCCCCATAACTGTAATCAGAAAAGATATAAAAAAGACAAAATGCGTTGATACAACGATCAGTAATATCCTCGAAGCAAGAGTACCATACACTCCAGAAGTGCCCGGGCAAAAGAATCAGGAAAAATCACAAATTAAGAGTAATCCATCAAAGATTAAAGTTGCAACTGAAAATACGTTTGGAAAAGATTCGGCCGAAAGACATTTATCTTttcaagaaagaaagaaagaatttATAGAGGCTGCCAGACAgAAATATATAGCCAAACAcaatctcaatgttacgtaaCTGACAGATACAAACATTTGAAGTTACTAGAGGttgccgtttcaaatcctgCAAACGATTGTTGTATTTTGGGTGAAtggtgaagttgaagtttCCAAATAattgcaagaaaaatgaaatttatatattgcaGTCTATGGAGGAttgtttaatttataaaactcgacgatacaatacaatacttaTAACAGATAGGACGCACATCACTTGTGAGCAGGCAAGATGAAGCTAAGACAGTCATGGTGAAACTGTGAAAGGAGGACTTTAGAAAGCAGGGACAACTGCCTCTCTAATTAAGGTGGATCTTTAGTAGCAAATGGTGCACATAATACATTATAACccccaacctcgttcccaggagCGAGAGGATCacgaccctgggaacgaggttgtgtgaataataaaatcagaacactgtaaaacacatgttttCCAGCACCCTGTTGTATGACTTTTGCATTAAAAATCTGTATAACAAAAGCAATGAATAACTACATTCTAGCATAGACTTTAGTTGTTTTTGGctataaatattgtttttaaaaataaatttaattatggtttctgaatataatttatttccaCATATATAATATTGTAACATGTattgtatcaaatattctttTTCTGATGCTAAAATAACTTAAACTACATtagtttaaactttaaacCACTATGATGTCACTTGCGGCTAAATTCAccaacgccgccatcttggattttaacgtGAGGCTGgtgagggagactgggaacgactatatttactttatttacacatttattctataacaatcctttaaaacaggaattctgcatcatttcggtttttgccaatataaaaactattgtcagacttcacctactttagggaaaattaaggaattttataattcttacgaaggatttttcaaaatttgtatggtatgTGGAAGTAGACtgacttttttgttttatttacttacT

Protein

Uniprot

Gene family

Uniprot term	Description
Q6PBN5	Lipid droplet-regulating VLDL assembly factor AUP1 OS=Danio rerio OX=7955 GN=aup1 PE=2 SV=2
A9ULG4	Lipid droplet-regulating VLDL assembly factor AUP1 OS=Xenopus tropicalis OX=8364 GN=aup1 PE=2 SV=1
A1L134	Lipid droplet-regulating VLDL assembly factor AUP1 OS=Rattus norvegicus OX=10116 GN=Aup1 PE=2 SV=1

Gene family	Subfamily
Ubiquitin Family	UBD\|Alpha-Helix\|CUE

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02845	CUE	CUE domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003892	Domain	Ubiquitin system component CUE	Interproscan
IPR048056	Domain	AUP1, CUE domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15486	ANCIENT UBIQUITOUS PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0043130	Molecular Function	ubiquitin binding	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0030176	Cellular Component	obsolete integral component of endoplasmic reticulum membrane	Interproscan
GO:0030433	Biological Process	obsolete ubiquitin-dependent ERAD pathway	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0036503	Biological Process	ERAD pathway	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K19716	AUP1; ancient ubiquitous protein 1	-	Cell motility	-	deepkoala