Gene detail

Detailed information of ENSAPQP00000031580.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: CAB4002024.1, dnaJ homolog subfamily C member 17-like [Paramuricea clavata]
Species abbreviation LSARM · all data for this species · gene families

Sequence

CDS

Transcript

ENSAPQT00000035337

GTTTGCTCGAGTTGAGATATTCTCCCAACATCTCACAATTTCACAGGCTTTGATTGGTCAGATCAGAGAGATTGGTCCAATCACAGAGCCAGCGCGAAAACATGATTTAACAAGACCTTCGCCCTTCTTCTTccccaaaaatatatttcaggaaTGGCTGCCGTACAAAGCAAATTCTGGTCGGCCAAAGGACGTTTAActccctcaaaacgcaagaaaacttcctgaaaataTCTTCAAACACTTCTTCGAAAGTAGGAGTGAACAGAAATGCGTCAGAAAAAGAGATCACTAAAGCGTACAGAAAAAAAGCTCTCAAATGCCATCCTGATAAAAATCCTGATAACCCCAATGCAGCCGAGTTGTTTCACAAACTAAGCAAAGCTTTTGAAGTTATTGGTAATCCAAAAGCCAAGGCCACATATGATGCAACATTGAAAGCCAAGGAAAGGGCTCGATTGCGTGTTCAAGCTTACGACAGcaagagaaaaaaatttaaagaagATTTGGAAGGAAGGGAAAAGTCGAGTCAAGACGAGTATGTGAAGGATGAAGTTCTTGTGAAAAATTTGGAACAAGAAATTGAGCGTCTAAGAGAGGAAGgagtaaaaatattacaacGGGAACAAGAGTTAATGAAACAACAAATTGAAGAAGAAAGACAACAAACAGAAGCTACTGCTAGGACGAACGATTTCACACCAAAACTTAAGATTCGATGgaaatgtcaaaaaaatgACAGCACTAATGGAGGATACTCATCAGAGCTACTTCACTCCATGTTTAGAAAGtatGGTGAAATTGAGAATCTCCTGGTCTCATCAAAAAAGAAAGGAAGTGCTATCAtcgaatttaaaaatttcaaatctgCTGAAATGGcagttgaaaatgaaagaggAAATCCTGGGAACCCTTTGAAAATAACGTGGTTGGAAGGAACTGcttcaaattcaaaagttAATCATGATTCAAGCATTGACAGTTCTTCAACTAAAGTTGGTACACCCATACAAGTATCTGGTGAAAATAACTTGGCGAATGAGAGAGACTTTGAATCATTAGTTATGAGAAAACTACGACAGGCGGAGGAAAGGAAAAGACTTTGTGAAGAACTTGAAAATGAAGATGCTAGCTAGCAAGGTTAGTGTTGGCCAAGTTACGTATTTATCCCACACATAGTAAGGTCTTTATTGCAAAAGATACAAGTTGATGCAAAACGACAGTAAAGTAATGATGGCGGAAACACAGTCAGGATAAAAACAACATATGTATTAAGGCActataatatattttcacttcaaaaatgaacaatatattttaagaCCTCAACAAGAAATTTACAACATTAAGGAAAAGCTAATTGGAGAATTAATTATTCATGATGAACCATTGTTCTCCACTtgattattatcatcattttGTTTATAACATGTCCAAATACATGTCTGGCCAATGCCTGTCATGCCAATCACTGCGAATCCACGTTGTTCTAGCTTGTTCAAGATCTTCCTCGGAGGATCTGGTGATCTGTATTCTTTGCTAAAATGAGATAATGCATGAGATTTTGACAAGACAATGCAGTGCTCCTAGGATTCATTAGACTAAGTATAGATTACATACAAGTTATTTCCAAACTCGTTGATGAGTTTTGCACCCAGGTATTCCATCAGTTCTGGATCTGACCACTCATCACCAACTATAGTTGGTCCACATTCCTATAACAAAAGACCTGATGTTAGACTAATCTAGCATACTTATAGTACTATAAGTACTGTGTTTTATGGACTTTTATGCCAATATAGTCATGCCTACGTAGCCTGACGTCCGATGAAATGCACATACCAGTCTGATAAGTGTCGAAATTAGGACATACGGCATCCTATAAAGACAAATTCAGATGTCACTTCAATTACGATTTCACTCAAACATTTGATTATATGGAACAACGGATATGAAATACTAATATCATTGCTGCAGAGACTGCAAGTATTAAAACTATTtaggcacagaagcaatttAAAGAGTTCATACCTTAAATATTTAGTAAAAATTAACTTTCCCCACTCctatgtttttgtttttgtgttgttCACATCACTTTGTCTTACACCAAGTAACCTCAAACATTTACCAAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2KI83	DnaJ homolog subfamily C member 17 OS=Bos taurus OX=9913 GN=DNAJC17 PE=2 SV=1
Q9NVM6	DnaJ homolog subfamily C member 17 OS=Homo sapiens OX=9606 GN=DNAJC17 PE=1 SV=1
Q91WT4	DnaJ homolog subfamily C member 17 OS=Mus musculus OX=10090 GN=Dnajc17 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006756 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan
PF00226 all species →	DnaJ	DnaJ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR052094 all species →	Family	Pre-mRNA-splicing and ERAD-associated protein	Interproscan
IPR036869 all species →	Homologous_superfamily	Chaperone J-domain superfamily	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR001623 all species →	Domain	DnaJ domain	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR034254 all species →	Domain	DNAJC17, RNA recognition motif	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44313 all species →	DNAJ HOMOLOG SUBFAMILY C MEMBER 17	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0000390 all species →	Biological Process	spliceosomal complex disassembly	Interproscan
GO:0005681 all species →	Cellular Component	spliceosomal complex	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09537	DNAJC17; DnaJ homolog subfamily C member 17	-	Chaperones and folding catalysts	ko03110	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.