Gene detail

Detailed information of ENSAPQP00000031684.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: XP_028393841.1, chromodomain-helicase-DNA-binding protein 4-like [Dendronephthya gigantea]
Species Leptogorgia sarmentosa · all data for this species · gene families

Sequence

CDS

ENSAPQT00000035466

ATGGTAGGTGAATCTTcatcaaaaaagaaaaagaaactaCAAACTAAATCACCACAAAGTCCAGTAACATCCAGTGATGTTGTTGAGGAGACTACACCAGCTGCCAATCCAGATTCTCTTAAGAAGGTTGGTATGAGGTTAGGATCACTAGCAAAAACTCCATCTGAAGTGCTGGCAGAACATCTGGGTATGAAGCTGGAATATACAGTTCCACCCGAGGAAGAAACAGAAATGACGTACAAGAAGTTCCTACGTATTGTTCACAAGCAAATTACATCAGCCAATACAGGatttcctaattcaaaagtcCTGGCACTTGTGGGAGCTGCTTGGAAAGACTACAAAGCAGGAATGCAGGACAAAGGTAGCATGACATGCAATGCTTTGAGTCATTCCTGGGTCAGCTTCTTGTTGCAGTCTTATCTTCTGGATTCTCTAGCTAATATAAACACATTTCAAACACACAAAATATGTTTTGATTGTATAGACCGTACAGTTCAAGAGTTGGGTGATGATACAGACAGGTCTAGTGATGCAGGAAGCACAAGCAGTCGAACAAAGAAACGTAAAAAGACTGTGAGAAAGAAGAATGTGATTGAAGTGGATTCAGGTGACGATGAAAaaccaaagaaaaagaaaactaaaacaaatgagaaaacaaaagcaaagaaaGGCAAGAAAAAAGatgatgatgacgaagCAAATGATCAACATCAAGATTATTGTGAAGTGTGTGAAGAAAGTGGTGAACTCTTGTTATGTGATACATGTTCACTATCTTTTCATTTACAATGTCTTGATCCACCACTGGACGAAGCCCCACAAGGAGAATGGAGCTGTCCTAAATGTGAGGATGAGGAAGCTGAAATTGAATCAGACGTCCACTTTGATTTCTGTCGTGTTTGTAAAGATGGTGGAAATCTCTTGTGTTGTGATTCTTGTCCCTCTTCTTATCATATCCACTGTCTTAAACCACCTTTGAAAGTGATCCCTGAGGGAGATTGGAGATGTCCCAGGTGTAAGATAACTCCTCTGGAAGGACGAGCAGCAAAGATTTTATTCtggagatttgtgaaaataccTGGCGAAGGCAAGTCTTTGCAATGTGCCACGCCTTATGAACATGTTGTTCGCCAGTTCTTCATTAAATGGCATGACAAATCCTACTGGAAATGCTCGTGGGTTGATGAAATTCAGTTGGAAGTGCATCATCCTGGTTTGCTTGGAGCTTATGTTCGGAAGAATGACATGTCGGCGAACCCTCAGCTTGATCTTGATGAAGTGGACTGCGATGAAATCATTCATTTACACGAAGCACATAATAAAGTGGACGAGAAAGATTTAGAAGCCAGATTTTATCGATTTGGTGTGCGCCCAGAATATCTTCAAATTCAACGTATTCTAAACTCTAAGAATGAAAAGGGGAAGGTGACTTATCTCGTCAAGTGGCAAGAACTTCCTTATAACTTGAGCACATGGGAGGATCCAAATGATAAAGCTAATAATCAAATAAGCAACTTCCAAGAGCACAttgcaaaatatgaaaagttTCGGTACAAAAAGACCCAGAGTTGGTCTGACATTTTTCGTGTGATCTTTCAGTGTAAACGAAAATATGAAACTCAACCGGACTTCATCACAGATACTGGTGGAACGTTGCATAAATACCAAATGGAAGGTTTAAATTGGCTACGTTTTTCATGGGTCCAAGGAACGAACACCATTCTTGCTGACGAAATGGGACTGGGAAAGACAATACAAACaatatcatttatttattccTTATTTAAAGAGGGTCATTGCAATGGTCCATTTCTGATCAGTGCGCCTCTCTCAACGTTGATCAACTGGGAACGAGAGTTTGAGTTTTGGGCGCCGGAGCTGTATTGTGTGACTTACATTGGAGATAAAGACTGCAGGGCGGCCATCAGgCAGCACGAGTTTTCTTTCGATGAAAATGCTGTCCGTTCGGGGACTAAAGTCTGCAGAATGaagAAAGACGCTCCGGTGAAATTTAATGTCCTGTTGACGTCATATGAACTGGTCGCCATTGACAGTGCTGTGTTGCAGTCGATAAACTGGGCAATACTTGTTGTTGATGAAGCACATCGTTTGAAGAATAACCAATCAAGGTTCTTTCGAGTTTTAAATGACTACAGTATCAACTACACCTTGCTGCTGACTGGAACTCCTTTGCAAAACAATCTCGAGGAATTGTTTCACTTGCTGAACTTTTTGGATGCGTCCTTATTCAAtgataaaaacagttttctTGGTGACTTTGAGGACGTCGCGAAAGAGGATCAGATCAAGAAATTACATGAAATCCTGGGTCCTCACATGTTGCGTCGTCTCAAAGCTGACGTTTTAAAAGAAATGCCTTCCAAGAGCGAGTTCATTGTGCGAGTGGAGCTCAGCCCTTTGCAAAAGAAATACTACAAGTATATTTTAACAAGGAATTTTGAAGCTTTAAATGCAAAAGGATCTCAGACCGTATCGTTGCTGAATGTGATGATggaattgaaaaaatgttgtaatcATCCATTCCTCTTTTCCACTGCAGCTTTGGTACGTGATTGTAGCAATGTTTCGTTGTTTCTAGGAATTTGTTTTACTCATTTGCTTATTTCCCAATGCAACAGCATGACTCGAGTATTGGATTTACTGGAAGATTTTTTGGAAGGTCATGGTTATCAGTATGAACGCATTGACGGGAATATTACTGGTCAAATGAGACAAGACAGCATCGACAGATTCAATGCTCCGGAAGCCGAGGCATTTTGTTTCCTGTTGTCAACCCGTGCTGGAGGACTGGGCATTAATCTGGCTTCATCAGACACAGTCTTTATCTTTGATTCAGATTGGAACCCCCATAACGATATTCAGGTCAGTACTTATGCTGTATATAATGTCCAGGTGATGATCTACCGTTTCGTGGCTCGCTCCACAGTGGAAGAACGCGTCACTCAAGTTGCCAAAAAGAAAATGATGTTGACACATTTAGTGGTGCGGCCTGGCTTAGGATCTAATAAAGGTGCTAGTATGTCCAAGAGAGAGCTGGATGATATCTTGAAGTTTGGGACTGAAGAATTGTTTAAAGATGATAATGCTAAAGATGGAGAGTCTGGTGATGCAGGCTCGATCCATTATGACGACGCTGCCATTAATAACCTGCTCGACAGAAATCGCGAAGGATTGGAAGAAAAATCGTTGTTGGCCAATGAATATCTTGCTTCTTTTAAGGTTGCCAGTTACATTgtgaaacaaaatgaaaaacaggATGAAGTTGAAGTTATTAAAGAAGCTGAGAAGCCCGATCCAGAGTATTGGGAAAAATTATTACGTCATCATTATGAGCAACAACAAGAAGATATTCAATCAAAACTTGGAAAAGGCAAAAGAATACGTAAACAGGTATTgtacaataatttttttctttcaacagcTTGGTCAGGAGCATTCTCTGACGGAGATGATGGTTTGGATGATGAAGACGAATACAACAAGAAGTCTGAAGTACAAGGTCGCTCTCGAAAATTGAAGCCTGACTTAGATTATGTCCCACCACTGTTGGCTAAAGTGAATGGAAACCTCGAGGTCTACGGATTTAATATTCGGCAGCGACGCGCCTTCTTGAACGCGATCATGAGATATGGATTACCTCCGAAGCAATCATTCAGAACTCAATGGTTTGTGCGAGATCTTCGTGGGAAAACAGACAAAGAAGTCCAGACGTACGTATCAATGTTCATGTGTCACCTGTGTGAACCCACACCAGACACCATACCTAGCTATGCTGATGGAGTTCCTAAGGAAGGAGTTCAACGTCATGTGGTTTTAAACAGGATTGGGATCATGAGTTTAATCAGGAAAAAAGTTGATGAATTTTCGCCGTATAATATTCTCCCAAAGCCGGCAAATGCTGTTCGGACAAAGgaaaataaacaaaacagaACCATAGAGATTAAAGATTCTGATGCAGCAGTATCAGTTGAGAAAGCTGTGGAGAAGTCGACTGACTCTAAAACAGAAGAAACGAATAATGAAAAACCGGCAGACGAGAAAAACACGGCGTCAAAATCCGATGAGAAATCGGAAAAAGGTGGTGCTGGCAAAGTTGATGGTGAAAAAAATGTCGCCGACAAATCTGAAGACACCACAACCGAGGCATCCAGCACGGATGCTGAAACTGGAGAAGTGGAAGTATCGAGTGATTCGACTGGGAAATCAAGCGATGGGAAAGAATCGGATGAAAAAGCGGACGACACCAAATCTAACGAAAAAAAGGATGGCGACAAAAAAGTCGACAGTACAAATGATACGGATAAAAATGTCAAGGGAGAAAAAAATGACGGCGACAAAAATGACGGCGAGAAGAAGAGTGATGGTGGTGAAAAAGTTGTGGAGAAAAAAGACGCTTGTACAAGTACACCGCAGCAAGAGGCGAAGGAAAAAGATCCGAGATTTGCTTTACTCAGTCCAGAAAATCTGGTCAAATTAAGATCCAAGGAGTTCGTATTTAACATCGCTGATGGCGGTTTTACAGAACTGCACACAATATGGGAAGTGGAGGAAAGACAAAAAAGAGATGACATCTGGTGGAGAAAACATGATTATTGGTTGTTGGCTGGCTTAGTTGTTCACGGGTATGGAAGGTGGCAAGATATTGCTAATGATCCAAAATTCACTGTAATCAACGAACCTTTCCGTCGAGTTTCACTCGAATACAAGAACAAGTTCATATCGCGTCGATTTAAGCTATTGGAACAAGCCTTGATTGTTGAAGAACAAATTCAAAGAGCGAAACAACTTAATTTACACCAGGATCCAAAACTGCCTGTTATGGCTCTTAACTCCAAATTTGCTGAAGTGCAGTGCTTGGCTGAAAGTCATCAGCATCTCTCGAAAGAATCTTTGACTGGGAACAAACCAGCCAATGCAGTTTTACATAAAGTTCTCAATCAATTGGAGGAATTGCTTTCAGATATGAAGAACGAGGTGACACGTTTACCAGCCACTTTAATCAACCTCCCCCCAGTCTCCGCTCGGTTACACATGACTGAAAGAAGTATCCTAAATAGATTGGCTCAGAAGAAACCCGGGCCTCCTGTAACTTCTGAGAGTACGAATGCTAAATCACAGGCTTCGCCTGCGACAGGAACTTCGACCCCTGGTTCCACTACTCCGGCCACAGCGACCAGTGAAAAAACCCCGGTAACATCGACCCCCACAGATGTGAGCACTCCATCGAGTCCCGAAGTTCCCAATGTCGTGGGCAACAAAACATCAGAAACGCTGAAAACCAGTCCTGCGAGTGAGCCTACTCTCCCTTCTAAATCAGCGGCTGACGATACAAACACGTCAGATGACGTCATACTTATCGAATAA

Transcript

ENSAPQT00000035466

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6PDQ2	Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus OX=10090 GN=Chd4 PE=1 SV=1
Q12873	Chromodomain-helicase-DNA-binding protein 3 OS=Homo sapiens OX=9606 GN=CHD3 PE=1 SV=3
Q14839	Chromodomain-helicase-DNA-binding protein 4 OS=Homo sapiens OX=9606 GN=CHD4 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001712 (this species only)
Ubiquitin family	E3\|E3 activity RING\|PHD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06465 all species →	DUF1087	CHD subfamily II, DUF1087	Domain	Interproscan
PF00385 all species →	Chromo	Chromo (CHRromatin Organisation MOdifier) domain	Domain	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00628 all species →	PHD	PHD-finger	Domain	Interproscan
PF06461 all species →	CHDII_SANT-like	CHD subfamily II, SANT-like domain	Domain	Interproscan
PF00176 all species →	SNF2-rel_dom	SNF2-related domain	Domain	Interproscan
PF08074 all species →	CHDCT2	CHDCT2 (NUC038) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009462 all species →	Domain	CHD subfamily II, SANT-like domain	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR000953 all species →	Domain	Chromo/chromo shadow domain	Interproscan
IPR009463 all species →	Domain	Domain of unknown function DUF1087	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR001965 all species →	Domain	Zinc finger, PHD-type	Interproscan
IPR019787 all species →	Domain	Zinc finger, PHD-finger	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR023780 all species →	Domain	Chromo domain	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR038718 all species →	Homologous_superfamily	SNF2-like, N-terminal domain superfamily	Interproscan
IPR002464 all species →	Conserved_site	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	Interproscan
IPR049730 all species →	Domain	SNF2/RAD5-like, C-terminal helicase domain	Interproscan
IPR016197 all species →	Homologous_superfamily	Chromo-like domain superfamily	Interproscan
IPR000330 all species →	Domain	SNF2, N-terminal	Interproscan
IPR012957 all species →	Domain	CHD, C-terminal 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45623 all species →	CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006338 all species →	Biological Process	chromatin remodeling	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0140658 all species →	Molecular Function	ATP-dependent chromatin remodeler activity	Interproscan
GO:0000785 all species →	Cellular Component	chromatin	Interproscan
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0042393 all species →	Molecular Function	histone binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11643	CHD4, MI2B; chromodomain-helicase-DNA-binding protein 4	EC:5.6.2.-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.