Gene detail

Detailed information of ENSAPQP00000032069.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: CAB3979001.1, SH3 and multiple ankyrin repeat domains 3-like [Paramuricea clavata]
Species Leptogorgia sarmentosa · all data for this species · gene families

Sequence

CDS

ENSAPQT00000035892

atgattaacaatataGATCATTCGAATGCTCACATTACgttgaaaattaatattccTGACAAAGGAATCTATGAGAAACGGTTTACCTTTAACTCTGAAGATCAGGTTTGGGCCGCCAAAGAACAAGTAATACATGAAATAGGAAAGGAGTTAAAAGATATCCAGAACTATGGTTTTTTCGTGCCACCACaccagggcaaggcagggaaGTTTATGGACGAAGGAAGACCTCTATCTGAATATTCTATTCCAGGAAACGAGCAAATACTCGAGTTCATGTTGAAAAGGCGCATCTACAGATCAATCAGTTTCGATGAAAACAAACTCACAAAGATTCACACGAAGACGAATTTGAAAAAGCTCATGGACCTGGTTGAACAAAATAACGCTGGTCAGGTTAACCAATTCCTGGAAAAGGGGCTAGATCCAAATTTCCAAGATCCGAAGACGGGAGAGACGCCTCTCACGGCTGCTGCGGGGAAGAACAATGCGAACGAAGTGATCATGTTTCTCATCAATGGCGGAGCTTATTTTGATTTTAAGAATCGCAATGGACTCACCGCTGTGCACAAGGCTGCTCTCGCGGGCAACTCCCATAATATCAAGGCATTTTTGGATCTCGGGGCCTCACCGAATTACAGAGATCTCAAAGGTCTAACGCCGTTATACCACGCATGTCTGAGTGGGAGGAATCCAAATGTCGCCGAACTGTTGCTTGGTGACCAGGCTGAGATTGGTGTAGTTGATTCACAAGGATGGCAAGAAATTCACCAGGTCTGTCGATACGGGCACGTGCAGCATTTGGAGCAGTTGATCTACTATGGCGCTGACGTTAATGCACAGAATGGATCTGGGAACACTCCCCTGCATATTTGTTCTTTGTATAACCAGGAAGACTGCGCTCGACTTCTTCTTTACCGAGGAGCAAGACGAGATATCGTAAATTTTGCAAACCAAACTGCTGAAATGCCTATTATCATGGTTTTGTCTGAAAATTTCTTTCCTAATCCCATAGTACCACACATCGATAAACCAACGTACAGTACCCGACGACGGACTCAAGCAAAAACCCGACCGACAGCCAATTCCGTGTTCCTCCGAGACTCCACGGACACTTTCATATTTTGCTCCGAGTCCCTTAGTACTACGTCATCGACGCCATCCATCCACTCCGAGACCTCGGAACCCATGTCTCTGGATCTTTCACCCCGGGAGATTGTACCTCAGGTCAGTGTGACGGAGCCCGAGGAAAGCCCAAGCCAAAAGCCGCGACGAAGGCGAACTTTGAGTGGATCTGGTACGGACTCTTCCTATGCCAGCGACTCCGGAGATGAGACAACGAACACTCCCGTTCTGTCGCCCAATTCAGGTGAACTTAATTTGGCTTGGAGGACCTATTCGCTGTCCTCTCTGAACAAGGAGGAAAGAGGGCATATCCCGAGAGTAAAAGAGGTGAAAGGAGCAGCAAACATGGGCCCCCACCCCGGGAAAAGTAATTCGCGGAAAACGTACGTGGCAGTCACGAACTTCACACCCACTCAAGCCGGGGAGTTGTCTCTGGCGGAGGGTGATCTCGTTGAAGTGATAACGAAAGGCGAGAAAGGTTATTGGCAAGGCTGCGTGGCTGGGAAAACTGGTTGGTTTCCTGCCGAGTGCGTGGAAAGTTTGAAGAAAAgaaaacaaaacaagtcAAAAGGTTCGAATTCATTACATAAGCCTGCTTCGATTGCAAGCTCCCTCAACAAAAGTAACACAAGTCTGGATCAGCAGCCTTATATACCTCCTGTTGTAACAACACCACAGCCACGACAAGTCATCTTGCACAAAGTGAAAGCCGGGTTTGGATTTCAAATGAGAGGCGCTAACATTCCAGCTGTGAACAAACTGGAATTCCAGCCATCGGCAAAGATCCCAGCACTTCAATATGTTGGAGACGTAGAGCCCGGTGGCGAGGCTGAGAAACGTGGAGTGAAGAAAGGCGACTATATCTTGGAGGTTAATGGGAATGACGTTAAAACAGCTAGCCATCGCCATGTTGTTAGTCTTATCAGAAAAACCGGTCAATCTCTGGTCATGAAACTGATCTCAATAGATGATGGTGAACATTTTCGCAAGCCAAGCAACAGTATTGTAACACCTCCGCCTGCTCCAAACCAGGTGATAGTTAATGGAACTGGTCATGTTGATGGAGCCACCGAAAAGAAGCCGCCTCCTATACCATCGCGGGCGCCTACGACGTCGTTGACCAGTAGACCCAAGTCCGACAGGACGTCCGTGACAGACGTGGATTTCGAGAAGACACCGGTCGTGCAAGAAGATCGCATTATATCCATTCCGAGAGAACGCATTTCCAGCGCCGAGCAGCAATGGCATTCACCATTGACCGGCTACAGTTCCTTGCCGCGGCGCCCAAAAAGCTCCTACGGTGCGATCATAGGCAGCCCTCACACGAGCCCATCGGATGAAACTGCTTCTAGGAACTTCCGCCCCGTCGATACCGTGGATAACACCGGATTTACAACCCTGCCTTCAAAATCTAGTGCCAAAGAGGAGACGCGTCGCTACGCGTCCCAAGACGACTCGGCGGTTACTCGCAAAAGGCCAAGTTCGGCCCGGATGGCCAGGGATCGCCCTAAATCGTGGATGCCTAAGGTTTTGCCTTCAGAACCCCCTCCGATTTCTCCCCCGGTCCCCCGAGAACAACCCCCACCTAGACCAAGTGCAGACTCTAAACCCGTAGCAAGGACGGACTCGAAAAGGGACAAAAAGAGACGGTTCTCATTCCGGAAAAAGAAGGAGAAAGATTACATGGCCACCTCAGCTCCTGCACCGACAGATCCGGAGGAAGAACTTGACGGTGAAGATGAGACAACTACCAATGACACCAACGAGAGTCTTCACATCGAAGACGAAGAGGCGAGACCGAGTTCTTTACCAGGTCTTCATAAAAGGTTGTCGACTTTCAAACCGGTTACGGTGCCACATAAGCACGTCGTCCACACGAATGTCGTGTCACCCGAACTTTCTCAGGCTTTAGAGAAACGGAAATCCCGAGGTTTGTCGTCCGGTACAGACGATACGACCTCCCCGGTATTTTCTCCCGGGCATGATGTCCACGTCCCGGTATTTCCCCCTCCTCCTACCCAATCTCCACCCACCCCACCCAAGTCGAAGTCACTCGAACAGTCGATCAAAGAGGAGATGATGCGCCGAAGAAGTAACACTGCCCCTGCTTCGTCTATCCCTGCTAAACCCCGCCGCACGTTCGAGTACAGAAAATCTAACGGTGAACCCTTGGTCGAGGGGGAAGAGCCCCCGGAAGAGAGAGGGGGCCTGGACTCCGAACTCGCAAAAGCGGTTGCGAAGCGGGCGGCTAAAATGACCACAGCACCAAAAGCGGATACGCATATCTATGAAAACGTGCAGAATTTGAACATTAACGCCACAAGGGAACCAAGGTCCTCTGTTGAAGAACCTCCGACTTTAACTATCGAGGAGAAACTCAAGAAACTACATTTAGGCGGTGAGGTTATCCTTCCTACGAAGTTCAAACCACCAGTTGCTCCACCATCGGGGAAAAGCACAAAGGCAAAACCGCCGGTGGCTGCTCCTAATGAGAAACCAACATCACCGGGGAATGTTCCTCCATCGGATGTTTTAGCGCAAGGAAAACTTCCTCCCAAAACGTTTCCTAAACCCAAAAAGAAGTTGCCGTCAACTGGATCGGATTCTGGAAGTGATGATGTATCATCACCAACATTACGACCAATGACGTTGCCAATTCCAACGTCACCGCAAACTGCATCACCTTCACCGCCTTTGTTGTCGCCCGAGATGGTAGCCACTCAGTTCTTGGATGATGTGATAAACGAAGAAGTGAAACGATCGAACTGGGACACAGCATCCTGGAAAGATAAAGATCTTTCGTCCGGGAAATCATCGCCGACGTTTGTTCCCGAAACCGTCACGACGAGCGCTGGAGCAGCGACAAGTGACCACACTTCGCCGACAGCTACTGGGAAGAAGAAATATGTCTACAAGATTACTTTGGTTACGGAGAAGCAGGCAGACGGCACCGAGCAAACAAAGTCCGTGACCCAAGTTATAACTCCAAATCCCCAGGCCGATCGAATTTCTTCGCCTGGAGGCACTGAGCTTCCCCCACCACCTGCTCAACCACCGCTGGAATTTCTTGATGAAAATTCACTGCCTTCACCTGTGTTTACCCCACCTACCTCCCCTGGCTGTGAATATTCGGATCTCCCCGAGCTCACCCCTCCACCTCCGCCGTCATTTTCGCCTCCCCCACCGCCATCATTCTCGCCTCCTCCACCACCCGTAATTGAGGATAACGTTTCACTTCCTGCGGCAAATGCTGTCATAGAGGTCTCGCCCCAGTTGCCCCCGCCTCAAGAATTTCAGGAGATTCCTTCCAAACCCCCACCACCCATATCAGAACCCATTCCAATACGCCCTGAAGTACCAGATCCACTACAACCCAATCCACAACAACTACAACCAAATCCACTGGTAAACGAACCTTCCCTACCAGCGCAGCAAAATCCGGTGGACCACCCTGTAACTACCCCCATGCCGCAGCCCGAGGAGACCCACTATACCTCTCAGCTACCTGCCCCAGTAATTTCCCCGCCTGATGAAAACGCCGAAAACCAGGAGCTTCCCATTACGGTGGACTCTCTTCCCCCACCAGAAGTGAGCAAATCAGACGAACCAGTCCCAGATGAGATTGTTGTACCGCCGCCAGTATTTGCTGATACCACCGATGGTCAGGTTTCCGCAGAGGAAAAGCAGAAACTTGATTTGAAAAACGGTAATGACTCTGAAAAGCCTGTTGCCGACAATAGTGAAGCGTCTGTTTCAAGCGTGTGTGAAGACGCAGGCTCAGAAAAGAAGTCTTCGGAAGAAAATGTGCCAGTTGAAATCACAACCGAACATCCTGAAACACTTGTCGAGCCGTCTTCAAACGAAACCTCGCAAGATGAAACTAAAACAGCGGAAACTACGCCGCTTCCAGAACAACAAGAAGAAGTTACGAATGTTCAAGGCAATCAAAGCCAGGCACCAGAAGCTGATATGCAAAGCCAAGCTAAAATTGAAGAAACAGTCATAGGTAAGCGTTGGAGTAAGCAACTATGGGGAAATGGTAGCGGTAGAATATGTCTGCATTTCTGA

Transcript

ENSAPQT00000035892

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9UPX8	SH3 and multiple ankyrin repeat domains protein 2 OS=Homo sapiens OX=9606 GN=SHANK2 PE=1 SV=4
Q9BYB0	SH3 and multiple ankyrin repeat domains protein 3 OS=Homo sapiens OX=9606 GN=SHANK3 PE=1 SV=4
Q9Y566	SH3 and multiple ankyrin repeat domains protein 1 OS=Homo sapiens OX=9606 GN=SHANK1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002770 (this species only)
Ubiquitin family	UBD\|Other\|SH3 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF00595 all species →	PDZ	PDZ domain	Domain	Interproscan
PF16511 all species →	FERM_f0	N-terminal or F0 domain of Talin-head FERM	Domain	Interproscan
PF07653 all species →	SH3_2	Variant SH3 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan
IPR001478 all species →	Domain	PDZ domain	Interproscan
IPR032425 all species →	Domain	Talin, N-terminal F0 domain	Interproscan
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR051569 all species →	Family	SH3 and multiple ankyrin repeat domains protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24135 all species →	SH3 AND MULTIPLE ANKYRIN REPEAT DOMAINS PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0014069 all species →	Cellular Component	postsynaptic density	Interproscan
GO:0030160 all species →	Molecular Function	synaptic receptor adaptor activity	Interproscan
GO:0035255 all species →	Molecular Function	ionotropic glutamate receptor binding	Interproscan
GO:0043197 all species →	Cellular Component	dendritic spine	Interproscan
GO:0045211 all species →	Cellular Component	postsynaptic membrane	Interproscan
GO:0051705 all species →	Biological Process	obsolete multi-organism behavior	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15009	SHANK; SH3 and multiple ankyrin repeat domains protein	-	Glutamatergic synapse	ko04724	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.