Gene detail

Detailed information of ENSAPQP00000032168.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: CAB3987487.1, ---NA--- [Paramuricea clavata]
Species Leptogorgia sarmentosa · all data for this species · gene families

Sequence

CDS

Transcript

ENSAPQT00000035997

TCTAGCCCAGGTAAATAAGCTAGAGTAAGACCGCCAAACAATTCTTAgaatatgacgtcatttccaGGGAATTCCCCGCTATAAACGCCAATGACGTCATATCGACAGTAacataatattactatattgGCTTTCTTTGCCAAGTCGAAACCAGCGAGATAAATACACTTAACTACACTAAAATTGCACCTACGAAAACGTTTAATCGCATTATCGTGTGTGCCAACAATCTGTTAAACAGCACCAGCATACGGTGTGATTTTAATGATACTAACTACCACAAAATATCCGTGAAATCGATGTCGGAAGTAGAACGAAAAATATTGCGACAATTCGCAGTCGACTTGAAACGGGATGTTATTCCAAGCGACGTGTTGTGCCATCTGCTCTGTCTGTCAGAGGACGACTGTGAGCAAATACAGCGAGAGGAGGATCGTAAAGGACCCAGGGCAGCCGTATCGATGTTGTTGGATAGACTGAAGAAGAGATTACACCAGGGGGCTTTTAAGCAGTTTTCAACAGCTCTTGGAGAGACAGGATCTTCACACCTTAAAGAATTATTAGAGAATGCTTTGAGGGAACAAACACGCCAAGCAGAACCTGACCACAACCCGACACAGGATACAGCATCTAATCTGCAGTCTGACGTCCTTAAGACACCAACAAAGGAAACAACTAGCCTTCTGAGCCCGAGCACTCCAGAAACTAAGCAGTCAAAAAAGTCGACCAATTCCAAAAAGTCCAATAAAAAGCTCAAGCTGAAGAATGGTCGAGTGCCAAAAGAGAACACAACCAGCCCATCAGAGtcaaaaacacacacaaaGTTGAAAACATCAGATCCTCTCGTTTCCCAAGATACCACAGATCCCAATCCTCCTTATGTAAAGTGTGTGGTTAAGACCCCAAGGGATACCAAACCCAAGAACCAAGATGTATCCCAAAATGGTCCTAGATGTCCACCAGTGACAAGGAATAATGAGGATTCTCAGAACGAAATACCCTCCAGTAACAGCACAGAAACACAACCACCAGCAACAACCAATGCAACTGAGCCAGATCTTCCTGAAAATTCCAAAACAAAGTATGACACACTTGTTTGTTATGCCAAGAAAAATCGTGAAGTTGCACTGGAACTGAAGCAGTTCTTAGAGAGTGAGTATGGTCTTCAAGTGTGTATCGACTTGGAACACTTTATTCCGGGAAAACCAACTACTGATAACATTAGTGAGAGTATAAACTCAAGTGGTAGTGTCATCTTTCTACTTTCCCCTGAATTTCTCAAAAAGCCTTGGGCCCCATGGGAGTTGAAGCATGCTGTCTATGATTTCATTGAATCACAAAAAGATGGCACACATAAGAAGATTATTCCAGTGTTGCTTGAAAAATGTCAAGTGCCAGAGGAATTGAAGATATATACAGCAATCGAAATGGAAGGATCTGCTTCAAGGAGAGACTGTTGGAAAAAACTGGCAGCTGCTATTTCAGGCACATCTTgtagtgatgatggtgataacaGTGATGGTGAGAACGGTGATGGTGAGAACGGTGATGGTGAAACCAATAGTGATGAGGATGCAAATAATGAAGGAACCATTGGTGTTATTGATTGtaataatggtgatgatgatgatggtgttgACAAGGAAGGTGTTGAagatacaagtgatgatgaaaatggtgatgatagtgatgatgatttaAATCAGGAAGGTGGTGAAGATACTGTTAATGGCAGTGACGAGGCTGAaagtaatgatgatgatagtaCTGGTAgtgataatgatcatgatggtgttgatgatggagatgaaGATGACAGTGAAAATAGTACCaatgatagtgatgatggtgTCAATCAGAATCGTGATGGTAATGACACTGGTGCAGATGGTAATAATAGCAATGAAGCAGGTGATAGTAGATGCCAGGATGAGGTATccgatgatgttgatgataaCGGTGATGGTAATAGTGGAGGGGTGGGTACTAGTAATAATGTGGTACCAGTGGATGCTAATGCTGGTGGCAGTGTAAATAACCTAGGTAACAGGGGTGACGATGTTTATGGCAAGATTCAAAGCCTATGACTGGCCATAACTATAATTGCTAATAGCACTAATTAATGTACAAACAAATCAACAACTAACTTCAAAAAGCACTTAGATGTTAATCTTgtaaattcttcaaatgtaaaaGTACAAACTACCCATGTCTAAAAGGCTGGAAATATGTTTTGTAGAATGTGGAATGGACCCCACTGATCACTTGCGGGTAAATCCTGGAAAACGCAATCGGACATCCGCCAAAATTAGATTGCCCCTAATTCTATCTCCAAAATATTGGTTTCCAATAAACCAATAAAGCTAACCCTGATCCTAAAAAAAACCCTAAAACCCAGCcctaaatttcgaaaactttGTTTTGCAACTGTCCATTGTATTATTTTCCGTGAAGACATATTCATTCTATAACAAtacttaaaaacaggaattttgCATTGTtccggtttttgccaatataaaaactattgtcagacttcacctactttggggaaaattaaggaattttataattcttacgaaggatttttcaaaatttgtatggtaagTTTTATTACTAGGTAATATGGGTCATGCTTCGGGCTCAGTGTTGAGATTGTAAAGCCTCAGCTTTGCCCGCGACTCCGTCGAGTTAAAACGCACGTGCGTTTCTTGCGGTTACGGCATTGTAATCCCAATACAATATACCTATCTACGCTTGGGTAAAAATATAACCAACCTTTATacaaaaatttacaaacaccTGTTGACAAATGTATAGATCATCTTGAAAAATTGCTCATCGGATCATCGGTATTCTTTCTCTTGATTCTGTATGCTTCTAGTTCTTCGGCTGTTACCTCGTGGTAGTCTCGTTTGAGTGAGTTATAAGTACGCAAGGTTAAGTGAAAATGTACAAGAACAAAGACATATGTTGTCAG

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002753 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16739 all species →	CARD_2	Caspase recruitment domain	Domain	Interproscan
PF13676 all species →	TIR_2	TIR domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011029 all species →	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR031964 all species →	Domain	Caspase recruitment domain	Interproscan
IPR000157 all species →	Domain	Toll/interleukin-1 receptor homology (TIR) domain	Interproscan
IPR035897 all species →	Homologous_superfamily	Toll/interleukin-1 receptor homology (TIR) domain superfamily	Interproscan
IPR017279 all species →	Family	Toll-interleukin 1 receptor domain-containing adaptor protein, Tirap	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22662 all species →	TIRAP	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007249 all species →	Biological Process	canonical NF-kappaB signal transduction	Interproscan
GO:0032760 all species →	Biological Process	positive regulation of tumor necrosis factor production	Interproscan
GO:0032872 all species →	Biological Process	regulation of stress-activated MAPK cascade	Interproscan
GO:0034142 all species →	Biological Process	toll-like receptor 4 signaling pathway	Interproscan
GO:0035662 all species →	Molecular Function	Toll-like receptor 4 binding	Interproscan
GO:0035663 all species →	Molecular Function	Toll-like receptor 2 binding	Interproscan
GO:0043123 all species →	Biological Process	positive regulation of canonical NF-kappaB signal transduction	Interproscan
GO:2000343 all species →	Biological Process	positive regulation of chemokine (C-X-C motif) ligand 2 production	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSAPQP00000032168.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.