Gene detail

Detailed information of ENSAPQP00000032410.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: CAB3986951.1, DEAD-box ATP-dependent RNA helicase 39-like isoform X2 [Paramuricea clavata]
Species Leptogorgia sarmentosa · all data for this species · gene families

Sequence

CDS

Transcript

ENSAPQT00000036256

ATATTGAAAACTGAACCACCGTGACCGAGCGCAAAAAGCCTAGAAAGAACTGGGAACTAAATGGaagaaatgaatgaatgataATTGAAAAGAAAGAGAATGAGGAAATTCATGCGTTCTGCTACACTGGTGTGGAGAATTTCCAATACTTGCTTGAAGGCTAGATGTCTGGCCACAGCGAGCTCCCAATCTTATATAAAGAGAAAACCTGATGAAGTGAAAGAGAGCATCAGCAAAGGGCCGtcagaaacatttttgaaagcattttCAAAAGAACACCCTGCATTACACGGGATTATCACAAGCAACCATGACACACcagattttaaaaatcttgGTTTGAGAAGAGATTTATGTGATGCTTTGAAAACTATGAACATTGATTTACCAACACCAGTTCAGATCCAAAGCATTCCAAGAATCTTGAATGGTGAGAACGTCCTGTGTACGTCTCAAACAGGTTCTGGGAAGACTTTGGCTTACCTTCTACCAATCATTCATTTATTGAAAAGCCAGGAAGATAACGAGGGGATCGTATCGAGGTCAAGCAGACCACGTGCGTGCATTCTTGTTCCATTCCGAGAACTTGCCGTACAGATCCTCGGTGTAATTAAATACCTCACTCATTTTACCAAGCTACGTTCACTTGGTTTAATTAGCGGACGAAAAAAGAAATGGATACGCGAAGGACTTTATGAGCCGGTTGATATTGTGGTTGGGACACCGCATACACTACTTAGATATTTACAAAAAGgtGATGTTTTTCTGTCCGACTTGTCGCATCTTGTCATTGATGAAGCAGACACCATGTTCGATCCAAGTTTTCTTTCACTGGCAGTAGAGATCTTGAAATATGCAGGATTAAACTCCTGGTCAGAATCGGAACACCCTCCACAAACAACGTTTGTTACAACTACCGTACCACAAGAAATGGTTAAAATGCTGGACGACATGGTTCCTAACTTAGCGATATGCAACTCTGGTTTGCACCAAGTTCTACCGCACGTCTCGCAAAgatttgttaaaatttctCAGCACAAGAAAAGCGGGTTACTACTTGACTTAGTCACACGAGAACTGAAAGAAAACGACAGCAAACAAATCATGGTGTTCTGTAACACAACAAAAAGCTGCGATTGGACGTCGTATTTTCTGGAAGAACAAGGAATAACACAAATAAGACTGAATGGGAACATGTCTAGGAAGGAGCGAAGATTACATcttgaaagttttaaaaagaGACAAATCCCTGTCCTTGTTTGTACGGATGTTGCTTCAAGAGGACTGGACACTACTAATGTTTTCCATGTGATCAACTTTGACTTTCCCACAAATGTTGTGGACTACATGCATCGTGCTGGACGTACTGGAAGACTGGGGACCACAGTGACATCATCTCAAGTGACCAGTTTTCTTAGCCATAACAGAGAGCTTGTTATTATGGAGCAAGTCAAGAGAGCGATGCACAAGAAAATTCCCTTGGAAGATGCCAGTCTGTGGCAGgtgaaaaaacaaatgaaataacagaaacaaaaaattaataataatatgataaaaattttaatctttttctacatataaaaatacaaatttacaCTAGCAGATGACTAATTTGATATATTACTATGCTTTACAAAAATCACCTATATACAACTCATTTTTGGAATAATTCTAATAATTCTATAATTGTGCTTCATGCCTGTCACTTTGTGTTGTGGCAATTGTAGTATGTGTGGTTGAACTCTCTTCAAATGATGGAGTGAAAGGATTCATACTTGCACTTGTGGTCAGATGTTTTTGTCCACAATTTTCAAGGCAATATTGGTAGATTTTTGTTTGGAGGATTTGTTATTTGCACAAGACTAGTGAAATAAATACAGTCAATTAGTCTAGACGAAACAATGGCAGTGCACTCTGTTATGTACCATTTACTTAATTATGGTAGAAAACACTTTACCTTTGAGGATGTAGTTTGTTAAAAGAGTTGGAACATTGGGACTGTTAGTTCTCATTGCATCCatgactgaaaaaaaaaacaaacatgtaATGAAACCACTAACCATCATGTGAAAATTGGCATCAGAGTGTTCTTTGTTATCGACATACTTTCAATGAGCTTCTCCAAAATGTCAGTGCTCGGACCACCATTCTTAATCTCATATGGTATTGTTGTCAAACTCTAAAGAGTAGTACAGGGTTAGTCATACCAGCCTGAGGTTTGTTACATGAAAATCATAATTACTAGGAACAGGAAAGAAGCCAATACAAACCTGACTATTTGGGGGATTATTTGACTgcaatgaaaatttcttttttgtttgagCTGCAGTTGTTTCTCTTAGTTTTTCCTGGACTGATAAAAAGCTTGATATAAAGACATTTTTAAGTTCTTTCTCTCGTATGTAAGCATCGCGGTTTTTCAGTTCTATTACCAGAATGTCAGAATATTGTTTGG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q56X76	DEAD-box ATP-dependent RNA helicase 39 OS=Arabidopsis thaliana OX=3702 GN=RH39 PE=2 SV=2
Q5VRY0	DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0184500 PE=2 SV=1
Q4R4T6	Probable ATP-dependent RNA helicase DDX28 OS=Macaca fascicularis OX=9541 GN=DDX28 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004271 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270 all species →	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014014 all species →	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR011545 all species →	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47960 all species →	DEAD-BOX ATP-DEPENDENT RNA HELICASE 50	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0003724 all species →	Molecular Function	RNA helicase activity	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20096	DDX28; ATP-dependent RNA helicase DDX28	EC:5.6.2.7	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.