Gene detail

Detailed information of ENSAPQP00000032839.1 in Leptogorgia sarmentosa

Genomic Location: :...
NR annotation: CAB3977303.1, pituitary-specific positive transcription factor 1-like [Paramuricea clavata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSAPQT00000036739

TTCGCATATTGCGTGAGGCGTTATCACGTTTGTATCCTGCATGTAATTGTATGTTTTGAGCAACAAAGGGAACCGTCTGCTCAATTGCTTGCGGTTCTTATATACTTCTAAACAAAAAGTCACATCGATATTGTCCGATATCAATTATGCATGTGATGAACTATGATTGCGCACTTATAAAGCTCACAGCCCCATGCATGATTCACACACATTTCAGTTTGCGCGCTTGAATAACCAACACACATCAGACAAACGAGAAGACGTGAACAGTTCGCGAAGTTATTTTATGCATTTTGGAAATGGCTTGCTCCATGTTTACAAACCATAATGCATATACAACATACAAAGCTTATGAATCCTTCAGTAACTCGAGTGTCAGTAATCCTGTGATGGAAAACCCATTACCTTACCCAACATCATCCTCAATTATCCAAACACCAAGAGATCAGGGCGCGCTTCATAAACCCCAGTGTCGATACACGTACACTCTACCAAGTCCTGCTTTGACTGCAAGTACAGCAGGGAACATTCTTGGAAATCACTCTGTCTTTGATCCAGAGCTTGAAGTCAGAGCGAAACAGTTACAAGAGTTGGAACGGTTTGCAAATGAGTTCAAACACTGCCGTATAAAGCTTGGTTACACTCAGACAGGGGTTGGAGCTGCATTGGCTGCAATACACGGCACAGATTTCAGTCAAACCACAATATGTCGTTTTGAGAATTTACAACTGAGTTTGAAAAATGCTTACAAACTAAAACCGATTCTCACGAGATGGCTTGCCGAAGCTGAACGACAAGGAGCGGAAGATAGCGATGATCAACTTGGACAGGATCGCAAGAGAAAGAAGAGAACCACCATTGGTTTGACAGCCAAGGAAGCTTTGGAGCGGCATTTCATGAAACACCCGAAGCCTTCCTCCTTGGAAGTCTACAGAATTGCAGAGAGCCTAGGACTGGATAAAGAAGTTGTGAGAGTGTGGTTTTGTAACCGCAGGCAGCGAGAGAAAAGAGTTAAAACAACATTAAACACTGCTCTATCTCTTTTCCCGCCATTGCTTCATCAGCCAACTGTCATGTAAGGTTTGGTACACAAGGAAACGAGAGAAAAGACAATACCTCTTCTCACCACACAACACAGGAAGGAAACCTCTCATGCTCATTCTTCCAAGGTGGCCGTCCTCTGGAACAATTCAATAGAATTCATAGAAAAAATGTCACGTGTCATGACGTTGTATTTTAAGATCCTATCCGGCATGTATTCCCTAACAAGGTAACGAAGCCTGGACCAGCTGACCACTAAAGTTATAAGTTATTGATGTGAAACTTTTAACTGAAAAAATCAGCTTTTCATCTCATGAAATTGGAAAGCAGAAAGATTAATTTTCCACTCGGTTGATTGAAGGATAATTTTACATTCCTTTACATTACAACGttgataattattaatttacattttattcattcattATTTACACTTGCTGCAGTTTCCTTTCAAACATATtgtgaaaaaatataattatctcTAATATCATTGTCCGTTTACGTTAACAATTACGATGTGTGGCAGCGATAGCACGTTTGGCTACAAGTCTTGTCTCCAAGGAAAACTTCAACCACGTCAATTGTCGCTTTTGTGACTTTCAACAGCGACATTTTCACTTGATTTGCttagtttttgaaaaaaatcattaattcTTTCTGTGATGTTTTCGTTGTCCTGTTGCAAAGCATTATTCGCTGATGCCCTTCGTTGAAGCAACTTGGGCACCTGGAGACTATCACTTGAACGTTTTCGGTTCGTCTCTCTGCACTCGTGTAATACAATTGGTGGTGGAAGCGAAAATCGACGTTTCGCTTTTCCACATGAAGGTTGTCCCGTCTTATCAGGTGGATGAGGTGGTGTAACGATTGCTGGCAACATGATACCTTGTCCTCCACTGAGTTTTTGAGCAAACCGAGGGCTGAGTTTTTTCATATCGGTTGAGGATAATGGTGGTTGAACTTCGCTTGAATCTAAGTTCTTTAACTTAAGTATTTCTTCTCCTTCTGCTATTTGCTTTCTTAGTTGATCTTTCTCA

Protein

Uniprot

Uniprot term	Description
P10037	Pituitary-specific positive transcription factor 1 OS=Rattus norvegicus OX=10116 GN=Pou1f1 PE=1 SV=3
Q00286	Pituitary-specific positive transcription factor 1 OS=Mus musculus OX=10090 GN=Pou1f1 PE=1 SV=1
P79364	Pituitary-specific positive transcription factor 1 OS=Ovis aries OX=9940 GN=POU1F1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00157	Pou	Pou domain - N-terminal to homeobox domain	Domain	Interproscan
PF00046	Homeodomain	Homeodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000327	Domain	POU-specific domain	Interproscan
IPR001356	Domain	Homeobox domain	Interproscan
IPR010982	Homologous_superfamily	Lambda repressor-like, DNA-binding domain superfamily	Interproscan
IPR017970	Conserved_site	Homeobox, conserved site	Interproscan
IPR013847	Domain	POU domain	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR050255	Family	POU domain transcription factor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11636	POU DOMAIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09363	POU1F, PIT1; POU domain transcription factor, class 1	-	Transcription factors	ko03000	deepkoala