Gene detail

Detailed information of ENSAPQP00000032975.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: XP_028391080.1, E3 ubiquitin-protein ligase Mdm2-like [Dendronephthya gigantea]
Species abbreviation LSARM · all data for this species · gene families

Sequence

CDS

Transcript

ENSAPQT00000036888

CGTGCTCTTTTGAATGTCAAACTTCTCTCAACTATTTGCAAAACAATTTAACgacatgttgttgttttagAGATTTAATACTGAAGGGAATACTATAAGAAGAGACACTTCTAATTTTATTCGAATTTATACAATATTGTTGATCTCTGATCAAATGTTGAATTCTCCTTGCATTGGAATTTCTTTACGAGTGAGTACGTACTCACTCGCTTTTCAACGCAGCGAATTATTTGTCGTCTCCTGTAGAAACCCTTCAGTGTTAAGTATTTTTTTGTTGCTTTCGATTTCCATAAAATGGAGCAACCTTTACAATCCAGACAGGACCCAAAACCTTTAAGAAAACGCAAAAGAAAGCGCAGACGTCGATGCAAAAGGCATCCACAAGAGGGACCGCATTCGCCGACATGTCGAGGACATCATACAACCACAACCAGCGTTACAAACGGCCCTGCTTTGGTAAGAATATTGCCACGACTTAAGCCAGTGTTAGACTATCTCGATGTGAAGGGTGATGTTTTTACGAGAGAGCAGATTATGGGCCACCTAACAGAGTACATAAAGAAAAAGGCATTATATGATCCTGCTGATCCTAGAAAGGTGTACTGTGATAATGATCAACTTGGGGAGATATTTAAATGTAAAGAATTCTCCACAGCAAATGCATGTGAGTTGCTTCTTGAAAACTTGGAAAACGTTTCTCCTACAAGAAACAGTGCAGAGGCACAATCATCAAAACGAACAAGGTCTACTTTCCCCTGTCCTCCAACACCTTTAACATCTGTGTCCACAACGGATACATGCTCTTGCAGTGAAAGTGATCAACAGTCAACTAGCGATGTGTCTTGCTCAAGTCGTTCTTTACGGCCATCGTCAAGTGGGATTAAGCGAAGTTATGAAACTGCTTTTCCAgGTACCAGCAGTATAGTGCAACTATCTGTATCAAGTACACATGTGGAAACTAAAGATAGCATGCTTCTCGCAGAATATTCAAAACATTACGAAAGCATTTGTGAGCATTTCACTGATGTGGTCACAGACACTTCTGATGACTTGTTCTTTCTAAATGaAACGGATGAAGAACGTGTTGTACGACAAGTACCTGACAGTACTGATGAGGAAAGTATTATCAGACAAGCTTTCAGTGAGGAAGATGAATTCACAGTAGAGTATGAACCAATATCGTATAGTGACGAGGAGAGACTAATGGCAGTACATGGCTTTGCTCAAGAAGTCAAGGGGGATTCGGAAGATACCGAGGTGGATGAAGGAGAAGATGGCGGAGATGAGTTGGGAAACAGTGATAGTTCAGACTCGGAAATTGAAGAAGAGGATAAATGGCAATGTGAGTCGTGTCCTGAACGTAATCATCCGATGACGAGACGCTGTAGGCGTTGCTGGACTGTGCGACGCGACTGGTTTCCTCCTTCGTTAAATCGAACATCGTCAGATCCAGGCCGAATCCAACATGAGACCGCGCAATTCGATCAAGCAACGGTGTCCGATTCTGCGTCAACGAGCCAGGCTCGCATTCCTGTACCTGTGGTAAATGAGCCCTCAGACTCGACTGCTTCGGACTCCAAGGATGGTTATGGTCGCATGAAGTGTATTTTGTGTCGCAAGGAGCCGCCCAATGGTTGCATTGTACATGGACGGACAGGTCACCAGGTATGCTGCGTTGTGTGTGCTCAAAAACTTAAAGATAGCAATAAACCTTGTCCCGTGTGTCGAAAGAAAATTGGTAAAGTTATAAAGAATTTTATGTAGCATCTGCCCTGCACGGATTACCGGTAATATCCAATGCCCCGGACTGCGCACAAGTTCCCATTGTATAAGAAAATGTGTTTCGGTATTTGGTATAATGATATATGACGTCAAAGGTTTTCTCTCTTCCTGgggaaaaatatttccattttatatttatatgtacTTAAAATGAAGAGAGGTTCAAGTATAGTTTTAAAGATTAAgtaatatataaaaactgTAGTTCATTTAGTGGTTTATATATTAGACCGCTTATGCACATCACTGCCTTATTATGGTAAAAATGTCAATATGTAACGATCATTTGCCTCCGGTAAGGTGAATATCGGTGGTTGTTTCAGCATAAATTACACAGGAGATTATCATCTGTGTATTTATACTGactagaaatacaaaattattatGTAGATACGACATGGGTCGTACACAAAACCACTAGGTGGTTAGTTAAGGCAACTAGATTATGCCAGTAGATTATATAGTgcacaaatattttgtcgagttGCTTGCTTCATGTCAGTCTGATGACAAAAACTGTAGGTCTGTAGTAGTTTTATGTGAGATTATATCACAAGTTTATATTATAACGCTGTAACCGTATTTtgctattatatatatagcacGTTAAGTCGCAATGTGGCATACTGTCCACCATAATTATTTAAGCTAAGGTAGAAGTGTGAAAAAGTGGTTTTGGTAATAAATATGCACGTGTATGATTGGTCTCGTTGTTTTGTACCTGTAGTCACCATGTAACCATGACGACCGTGTTTTGGTAGTTGACCATACCCAGCTCAACCGGCAATATTTCATTGGCATATTCCAATGTTAGTAACGCAGTTAATCAAACCATCTTTGCTATGTACAGTTTATATCAAATTGTTTCCGTAAAATAATTCATACGTTACATAATTCTACACAAATACTGCAAATAGGGTAAATACTTCAGAAATATTACTACACTCACTCACATTACTACACTTTATATCTAACATAATT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7ZYI3	Protein Mdm4 OS=Xenopus laevis OX=8355 GN=mdm4 PE=2 SV=1
Q7ZUW7	Protein Mdm4 OS=Danio rerio OX=7955 GN=mdm4 PE=1 SV=2
Q5XIN1	Protein Mdm4 OS=Rattus norvegicus OX=10116 GN=Mdm4 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006295 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13920 all species →	zf-C3HC4_3	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF02201 all species →	SWIB	SWIB/MDM2 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016495 all species →	Family	p53 negative regulator Mdm2/Mdm4	Interproscan
IPR003121 all species →	Domain	SWIB/MDM2 domain	Interproscan
IPR036443 all species →	Homologous_superfamily	Zinc finger, RanBP2-type superfamily	Interproscan
IPR036885 all species →	Homologous_superfamily	SWIB/MDM2 domain superfamily	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR001876 all species →	Domain	Zinc finger, RanBP2-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46858 all species →	OS05G0521000 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0043066 all species →	Biological Process	negative regulation of apoptotic process	Interproscan
GO:0051726 all species →	Biological Process	regulation of cell cycle	Interproscan
GO:0007049 all species →	Biological Process	cell cycle	Interproscan
GO:0010468 all species →	Biological Process	regulation of gene expression	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSAPQP00000032975.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.