Gene detail

Detailed information of ENSAPQP00000033080.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: CAB4021559.1, chromobox homolog 7 [Paramuricea clavata]
Species abbreviation LSARM · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P60889	Chromobox protein homolog 7 OS=Rattus norvegicus OX=10116 GN=Cbx7 PE=2 SV=1
Q8VDS3	Chromobox protein homolog 7 OS=Mus musculus OX=10090 GN=Cbx7 PE=1 SV=1
O95931	Chromobox protein homolog 7 OS=Homo sapiens OX=9606 GN=CBX7 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004139 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21300 all species →	LbR_Ice_bind	Grass antifreeze beta roll	Repeat	Interproscan
PF17218 all species →	CBX7_C	CBX family C-terminal motif	Motif	Interproscan
PF00385 all species →	Chromo	Chromo (CHRromatin Organisation MOdifier) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR048518 all species →	Repeat	Ice-binding protein, beta roll	Interproscan
IPR000953 all species →	Domain	Chromo/chromo shadow domain	Interproscan
IPR052458 all species →	Family	Polycomb group PRC1-like complex component	Interproscan
IPR016197 all species →	Homologous_superfamily	Chromo-like domain superfamily	Interproscan
IPR033773 all species →	Conserved_site	CBX family C-terminal motif	Interproscan
IPR011049 all species →	Homologous_superfamily	Serralysin-like metalloprotease, C-terminal	Interproscan
IPR023780 all species →	Domain	Chromo domain	Interproscan
IPR023779 all species →	Conserved_site	Chromo domain, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46389 all species →	POLYCOMB GROUP PROTEIN PC	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000122 all species →	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0000785 all species →	Cellular Component	chromatin	Interproscan
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0035064 all species →	Molecular Function	methylated histone binding	Interproscan
GO:0035102 all species →	Cellular Component	PRC1 complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSAPQP00000033080.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.