Gene detail

Detailed information of ENSAPQP00000033085.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: CAB3991683.1, digestive organ expansion factor homolog [Paramuricea clavata]
Species abbreviation LSARM · all data for this species · gene families

Sequence

CDS

ENSAPQT00000037004

ATGCAATGGCGGACAATGGAAGGAAAGCGTGTACTATTTTATGTACTGTTTCTTTCTATTCCTGAATGTTTTTTCCGCGTAATTCTGGGGCAGAACACAAGGCCGAACATAGTACTTATTGCAGTGGATCAATTTGGCTTCGATGAGTTTAATGATTATTTGGGATATGCGAAAAATATCAGAACACTTTCGAACGAAGCCATTCAGTGTAGTCATGCATACTCCCAACTTTATCCGATCTCTTCAAGGGCTGCTTTGCTGACCGGTCGTCTACCAGTGAGAACTGGAATGGTAAAGGGTAGATTTCTTCCCTTTACTTCGCTGCCTTCGATTGCCTCTTCTGGAGGCTTGCCTTTGAATGAACAAACATTGGCCGAGTTTTTAAGAAGAAAAGGTTAcacaaataaatttatagGCTTGTGGGATCAAGGCTTTGGACGCAAAGGCAAGTTTTTGCCGTTGAACCAGGGCTTCGATACGTGGTTCGGTGTCCTAACGCGTCACAGTAAATCGTGCACAGGCCTGCTGCAGAAACCTCATGAAACATTTGTAAATGAAGCGCTATCACTTTTCCTCTATGGTTTGCTCTGGCTtctgtttgttgttgtttcattGTGGTGCCTTTGCTTTCTTAAAGCAAAATTGATAACCTTCTTGGTTATTCTGGGTGTCATTGTGTATGCAACCAATGCTAGAACAACATTCATCATTGTAAGAAGTTGTGTTCTGTATAAGGACACTCACATGGTTGCCCAGCCTTATGACGTTGAAAACATCACCTTGCGATTCACCAACGAAGCCTTGGGCTTTATAAAAACTGGAGCACGACCATTTTTTCTTATGGTTAATCATCTTGCATTATCAAAGCCATTGTTTGCTTCTCCAATCTTCACAAACACCTCTGGTAAAAGTGATGCATTTTTAGATTCTCTTGTTGAGTTAGATTGGAGTGTTGGGAGTATTTTGAAGACAATTGAACATTTCAATCTCACTGATGATACTGTTGTAATATTCACCGCACTTTCTGGGGGAGTAGACTCTAATGACCGTAGGTTGTGCAAGAATTCCTTGGACATTCAAGAGGGTGAAGATGGTTGCCATAATTATCCTTTGAAAGGCAACCGTAGCACTCCAGACAACTGGGATAAACAAATACATGTTCCACTTGCTATCAAATGGCCGAAGATGATGCATCTTAGTGAAACAATAAACCAAACAGTCACATTGATGGATGTCATGCCTACAATATTACATTTGACCAACACCAGTTATTCCAATGGAACACTGAATGGTAAATCACTGGTTGGTCTGATTAATGGAACTATGGAAACATTGCATTCATATGTGTTTCATTATTTGGATGTGACTCGACCGTCTGCTGTAACTCACAAGGAGTTTAAGGTGTTTTATAGTACAATGTCAGATAATGGAATTGTGCATCATGATCCCCCACTGCTCTTCAACCTTAGAAATGACCCAGGAGAGACCACACCTCTGTCTGTTGAAGACTACTATGAGCTTATAGTGAACATATCTGCCGCACGCGAAAAGCACATTGAAAACAGAACTCGAAAGTGGATATCGCAGTTTGAATATCCAATATTACCCTGGCTGTTTCCATGTAAAGGCCGAAAACGTAAAGGAAAATCTAATTCTTTCGATCTAAACCAACTTACAAAGGGACAAAAGAAGCATCTGAAGGAATATGGAGAACTGCACCCTGTTGATCTCGAAGATGGTAATGAAGAAAAGGCAACTACAGCGAAAAAGCCAAAAACGATTGAGAGAATTGTTCATGATTCAATGAGAATAACTAAGAACAAGGACATGAACCTTCAGAGACcagaagatgatgatgatgaatatCAAGAACTATCGGCTTACCAGAAATTGGTATCCTCTTTTGTGGATGAAGATGTCCTGcacaagaaaaaaatgagCAAAAAACTTGCAAAGAAacttaagaaaaaaaaaacagacaCTGTTGTAGAGCAGTCAACTGAGAACTCCAACAGGGTTAGTCCATTGCAAAATCATTACAAAATTATCAATCATTACAATAGAATGCACCCCGATCCATTCTCGCAACATTTCGAGGTTGATCTCGAAGAAGATGCTGTTGAAAAACTGGAACACAGGTCATCTAGCAAACCGATAAAAACTGCAGTTACGAGTGGTACATCGGTACATTATCCATCATTGCCAGAACTACAGTCGAATAATTTTCCTGCACTAGACCCACAATCAAACCTAGAAAGTTTATGGGTGAAGCCAAAACTTAGCCAAAACTGGAATAACCTGAATCACGAGAACAGAGCAACTGGCGAAGTTTTCACTAAGTTACAGCAAGAATTGTTTccaattttaaattcataccAGGATTTGTTTTATTGCAACCGAGATTTCAGTAACGGTgaagaaataagaaaaatgTATTGTCTTCACGCGTTGAACCACATATTAAAAACCAGATCACGAATTTTAAAGAACAACGCAAAAATTGTTCAAGCACAGAAAGAAAGTCTGGTTCATGATCTAAAAGATGGCAAAAATCCTTTGGATGCAGAACTCCGAGATCACGGTCTGACAAGGCCAAAAGTTTTGATCGTTGTGCCTTTTCGCGATTCCGCTctgaaaattgttgaaatattaatCAAGTTATTGATGGTACAAGGAGAGGGACAAGTAATGAACAAGAAACGATTTTTCGAAAAGTTTACTGAAAGCGAAGCTGATAGTGGTTCGAAAAATAAGCCTGATGATTATAAAAAGATGTTTGCCGGCAATAGCGACGATTTTTTTCGAGTTGGAGTGGTGATCATGAGAAAGACGATAAAGTTGTATACAGAGTTTTACTCCTCGGATATTATTATTGCTTCACCTGTTGGTTTGAGATCCATCATTGGCGCAGAAGGAGAGAAGAAAAGAGACTTTGACTTCTTATCTTCCATCGAGGTTTTAATTATGGATCAAATGGATGTCTTTTTAATGCAGAATTGGGAACATGTGCAGCATGTCTTTGATCATCTTCATTTGCAACCTAAAGACTCCCATGAAGTCGATTTTTCTAGAGTTCGCATAACTAAAATTTTACCTGCGAATCAAGTTGGTTCCGTTTGTCAAGTTGTAGTCCAAATTCCTCAGGTTTATCATAAAGTTCTTGCTCCAAGTCACAAGGAAATTGCTGAGAGaagatttgaattttttgtcaaCAAAATATTTCCGGATCTGAAAGGAGCCAGTGGAATGATGTCCCACACAGCAATATTCATCCCATCGTACTTTGATTTCGTGAGGTTgagaaattttctcaaaaaagaagaaattgatTTTCTACAACTATCTGAGTATACATCACGGGCAAACATTTCGAGGAGCAGGATAGAATTTCTCCAAGGATCAACGTCTTTACTGCTTTTTACTGAgagattttatttcttttacaGGTACCGAATAAGAGGAATTAAGAATATCGTATTTTACGAATTACCACACTACGCCCATTTCTACCCAGAGATAGTGAATTATATGGATACGAGCTTAGAAGGTGGGGAAATCAGTGCGTCAAATTGTACAGTACTTTATTCAAAATTCGACGTACATAGACTGAGCGCAGTGGTTGGTAGCACACGGTGCTCGCAGATGACAACTTCTAACCAAACGGTACATATGTTCGTGACTGGAGAATAG

Transcript

ENSAPQT00000037004

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q642T7	U3 small nucleolar RNA-associated protein 25 homolog OS=Xenopus tropicalis OX=8364 GN=utp25 PE=2 SV=1
Q6PEH4	U3 small nucleolar RNA-associated protein 25 homolog OS=Danio rerio OX=7955 GN=utp25 PE=1 SV=2
Q5ZLG3	U3 small nucleolar RNA-associated protein 25 homolog OS=Gallus gallus OX=9031 GN=UTP25 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002910 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00884 all species →	Sulfatase	Sulfatase	Family	Interproscan
PF06862 all species →	UTP25	Utp25, U3 small nucleolar RNA-associated SSU processome protein 25	Family	Interproscan
PF14707 all species →	Sulfatase_C	C-terminal region of aryl-sulfatase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010678 all species →	Family	U3 small nucleolar RNA-associated protein 25	Interproscan
IPR000917 all species →	Domain	Sulfatase, N-terminal	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR017850 all species →	Homologous_superfamily	Alkaline-phosphatase-like, core domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12933 all species →	ORF PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000462 all species →	Biological Process	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0006364 all species →	Biological Process	rRNA processing	Interproscan
GO:0019843 all species →	Molecular Function	rRNA binding	Interproscan
GO:0032040 all species →	Cellular Component	small-subunit processome	Interproscan
GO:0034511 all species →	Molecular Function	U3 snoRNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14774	UTP25, DEF; U3 small nucleolar RNA-associated protein 25	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.